SRR1043466_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043466_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3608805
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	85524	2.3698703587475634	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	34889	0.9667743200311459	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14247	0.3947844230985049	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12136	0.3362886052308174	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9378	0.2598644149517638	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8073	0.22370286008803467	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7784	0.21569466901093298	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	6862	0.19014604557464312	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3756	0.10407877399859511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	35	1.2129021E-7	45.0	16
TACGAAC	20	7.035297E-4	45.0	44
CGATATA	25	3.8924714E-5	45.0	9
CGTTTTT	26195	0.0	43.866196	1
CGGTCTA	1065	0.0	43.098595	30
TCACGAC	1105	0.0	41.742085	24
CACGACG	1095	0.0	41.712326	25
CATGCGG	565	0.0	41.41593	1
CGGGATA	420	0.0	41.25	5
CGCACTT	12735	0.0	41.024734	34
ATCACGG	225	0.0	41.0	1
GCACTTA	12805	0.0	40.905895	35
TACGCGG	380	0.0	40.855263	1
ACGGTCT	1120	0.0	40.78125	29
ATTGCGG	675	0.0	40.666668	1
ACCCGCA	12890	0.0	40.65361	31
CACTTAC	12865	0.0	40.64516	36
CCGCACT	12835	0.0	40.634983	33
CGTTTTA	1275	0.0	40.588234	1
CCCGCAC	13020	0.0	40.42051	32