SRR1043465_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043465_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1168204
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72057	6.168186378406512	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7789	0.6667499854477472	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3052	0.261255739579731	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1386	0.11864366155226312	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1209	0.1034921982804373	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCAC	45	3.8562575E-10	45.000004	44
ACACGAT	40	6.8157533E-9	45.0	20
CGTTGAC	20	7.0333347E-4	45.0	38
CGGCACG	35	1.2119563E-7	45.0	28
GTGATCG	20	7.0333347E-4	45.0	34
TCGATCC	25	3.8908456E-5	45.0	20
TTATCGG	25	3.8908456E-5	45.0	1
AGAACGC	25	3.8908456E-5	45.0	7
CCATGCG	25	3.8908456E-5	45.0	33
ATGTACG	35	1.2119563E-7	45.0	28
ACTAGTC	25	3.8908456E-5	45.0	17
GTTCGCA	50	2.1827873E-11	45.0	17
ACAATCG	20	7.0333347E-4	45.0	22
ACGTGAC	20	7.0333347E-4	45.0	38
TTGCGAC	35	1.2119563E-7	45.0	23
TTACGCG	20	7.0333347E-4	45.0	1
ACATCGC	20	7.0333347E-4	45.0	17
CACGTTG	20	7.0333347E-4	45.0	36
CCAACCG	35	1.2119563E-7	45.0	31
GTGACGG	80	0.0	45.0	1