SRR1043464_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043464_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	598063
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42478	7.102596214780048	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4745	0.7933946758117457	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1832	0.30632224364322824	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	817	0.1366076817994091	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	775	0.12958501027483726	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	716	0.11971982884746254	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	634	0.10600889872806044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGCGA	45	3.8380676E-10	45.000004	1
ATACCGG	45	3.8380676E-10	45.000004	1
TCACGAC	80	0.0	45.0	24
GGTACTC	25	3.8885533E-5	45.0	7
GTACCGG	35	1.2106284E-7	45.0	1
GCCCAAA	25	3.8885533E-5	45.0	12
CTACTTG	20	7.030569E-4	45.0	40
GATAATC	20	7.030569E-4	45.0	8
TACTTGC	20	7.030569E-4	45.0	41
GATCGGC	20	7.030569E-4	45.0	9
TTTACGG	55	1.8189894E-12	45.0	1
CTATCGG	20	7.030569E-4	45.0	1
TAGACGG	50	2.1827873E-11	45.0	1
TCCGAAT	40	6.8048394E-9	45.0	36
TGGACCG	20	7.030569E-4	45.0	31
TAGGTCC	20	7.030569E-4	45.0	32
ATGGACC	20	7.030569E-4	45.0	30
CGGCAGT	35	1.2106284E-7	45.0	24
GAATCCG	20	7.030569E-4	45.0	8
GTGATCC	25	3.8885533E-5	45.0	13