SRR1043463_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043463_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2426475
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	118178	4.870357205411142	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16475	0.6789684624815834	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11778	0.4853954810991253	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6363	0.2622322504868173	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5000	0.2060602314056399	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4832	0.19913660763041038	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3344	0.13781308276409196	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3142	0.1294882494153041	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2823	0.11634160665162427	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	32385	0.0	44.152386	1
CGTTTTA	1480	0.0	43.63176	1
ACTACGG	120	0.0	43.125004	1
TACGGGT	295	0.0	40.42373	3
CACTTAC	5415	0.0	40.096954	36
ATAACGC	45	1.9297659E-8	40.0	10
CGCACTT	5490	0.0	39.67213	34
CTTACTG	5445	0.0	39.586777	38
ACTTACT	5440	0.0	39.581802	37
GCACTTA	5480	0.0	39.58029	35
CCGCACT	5545	0.0	39.197475	33
ACCCGCA	5555	0.0	39.086407	31
TTGTAGG	605	0.0	39.049587	1
CGGTCTA	365	0.0	38.835617	30
CCCGCAC	5655	0.0	38.75332	32
GCGCGAC	2160	0.0	38.750004	8
AACACGT	680	0.0	38.713234	40
TCAACGC	5860	0.0	38.70307	15
CAACGCA	5820	0.0	38.698452	16
CGCAAGC	5835	0.0	38.637535	19