SRR1043462_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043462_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2542242
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95573	3.759398200486028	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	20073	0.7895786475087738	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10570	0.41577473741681553	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8101	0.3186557377307117	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6583	0.258944663804626	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5044	0.1984075473538711	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3997	0.15722342719536533	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3760	0.147900947274099	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3319	0.13055405425604644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGG	35	1.212702E-7	45.000004	1
CCGTACC	25	3.8921455E-5	45.0	38
CGCATCG	65	0.0	44.999996	20
CGTTTTT	24880	0.0	43.453575	1
TACGCGG	295	0.0	41.949154	1
CGTTTTA	1260	0.0	41.607143	1
CGCACTT	6570	0.0	41.23288	34
TCACGAC	505	0.0	40.990097	24
CACTTAC	6630	0.0	40.9276	36
ACTTACT	6615	0.0	40.782314	37
GCACTTA	6640	0.0	40.764305	35
ACCCGCA	6645	0.0	40.733635	31
CTTACGG	260	0.0	40.673077	1
CTTACTG	6630	0.0	40.588234	38
CCGCACT	6660	0.0	40.54054	33
CCCGCAC	6725	0.0	40.349445	32
GTTGATC	2155	0.0	40.301624	15
AACGCAA	7175	0.0	39.951218	17
CGGTCTA	525	0.0	39.85714	30
TCAACGC	7160	0.0	39.846367	15