SRR1043461_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043461_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2462609
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	105805	4.296459567881056	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16934	0.6876446890269629	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11379	0.4620709174700491	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6003	0.24376585970407808	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4763	0.19341275858246273	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4730	0.19207271637519394	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3012	0.1223093069179882	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2914	0.11832978763579602	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2714	0.11020831971295483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAT	20	7.03486E-4	45.0	15
TACGTAG	20	7.03486E-4	45.0	15
CGTTTTT	28955	0.0	44.106373	1
CGTTTTA	1510	0.0	43.21192	1
CATATGC	1370	0.0	41.058395	32
TCACGAC	410	0.0	40.060974	24
ACGGGAT	360	0.0	40.0	4
GCCAGTA	1420	0.0	39.929577	24
GTTGATC	1455	0.0	39.896904	15
TAGTCAG	465	0.0	39.67742	33
CGCACTT	5155	0.0	39.544132	34
CGGTCTA	410	0.0	39.51219	30
ATAGCGG	365	0.0	39.452057	1
CACTTAC	5150	0.0	39.451454	36
CTAGCGG	755	0.0	39.33775	1
ACTTACT	5150	0.0	39.23301	37
TAACGGG	660	0.0	39.204544	2
ATTACGG	230	0.0	39.130432	1
GCACTTA	5215	0.0	39.002876	35
CCGCACT	5240	0.0	38.98855	33