##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043461_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2462609 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51378436446874 31.0 31.0 33.0 30.0 34.0 2 30.512261995306602 31.0 31.0 34.0 26.0 34.0 3 31.486507602303085 31.0 31.0 34.0 28.0 34.0 4 35.1041724447527 37.0 35.0 37.0 32.0 37.0 5 35.42757498246778 37.0 35.0 37.0 33.0 37.0 6 35.7608678438193 37.0 35.0 37.0 35.0 37.0 7 33.65532287098764 37.0 35.0 37.0 31.0 37.0 8 34.69297521449812 37.0 35.0 37.0 31.0 37.0 9 36.75869169648937 39.0 37.0 39.0 32.0 39.0 10 36.709214495683234 39.0 35.0 39.0 32.0 39.0 11 36.40032826973344 38.0 35.0 39.0 32.0 39.0 12 36.362048948899314 39.0 35.0 39.0 32.0 39.0 13 36.34591646501739 39.0 35.0 39.0 32.0 39.0 14 37.515638495595525 40.0 35.0 41.0 33.0 41.0 15 37.606638325450774 40.0 35.0 41.0 33.0 41.0 16 37.38787115615999 40.0 35.0 41.0 32.0 41.0 17 37.33492811891778 40.0 35.0 41.0 32.0 41.0 18 37.129001802559806 39.0 35.0 41.0 32.0 41.0 19 36.92377677495697 38.0 35.0 40.0 32.0 41.0 20 36.63091542343913 38.0 35.0 40.0 32.0 41.0 21 36.53745803739043 38.0 35.0 40.0 31.0 41.0 22 36.47833131447177 38.0 35.0 40.0 31.0 41.0 23 36.4235625712405 37.0 35.0 40.0 31.0 41.0 24 36.305131671329065 37.0 35.0 40.0 31.0 41.0 25 36.19057592983702 37.0 35.0 40.0 31.0 41.0 26 35.913646868016805 37.0 35.0 40.0 30.0 41.0 27 35.78920039681492 36.0 35.0 40.0 30.0 41.0 28 35.62191033980628 36.0 35.0 40.0 30.0 41.0 29 35.465396252511056 36.0 34.0 40.0 29.0 41.0 30 35.265833512344024 36.0 34.0 40.0 29.0 41.0 31 35.020736950120785 36.0 34.0 40.0 27.0 41.0 32 34.876502928398295 36.0 34.0 40.0 25.0 41.0 33 34.482980854857594 36.0 33.0 40.0 23.0 41.0 34 34.3420831321578 36.0 33.0 40.0 23.0 41.0 35 34.18401581412234 36.0 33.0 40.0 22.0 41.0 36 34.084073842010646 35.0 33.0 40.0 22.0 41.0 37 33.971951292308276 35.0 33.0 40.0 21.0 41.0 38 33.84729691152757 35.0 33.0 40.0 21.0 41.0 39 33.734038168462796 35.0 33.0 40.0 21.0 41.0 40 33.6481065406648 35.0 33.0 40.0 21.0 41.0 41 33.5454077362667 35.0 33.0 40.0 20.0 41.0 42 33.41500660478379 35.0 33.0 40.0 20.0 41.0 43 33.23670667978554 35.0 33.0 40.0 19.0 41.0 44 33.01463163660979 35.0 33.0 39.0 18.0 41.0 45 32.78461582817248 35.0 32.0 39.0 18.0 41.0 46 32.79026796377338 35.0 32.0 39.0 18.0 41.0 47 32.75765377288884 35.0 32.0 39.0 20.0 41.0 48 32.66391172938944 35.0 32.0 39.0 18.0 41.0 49 32.61503429898941 35.0 32.0 39.0 18.0 41.0 50 32.540539728393746 35.0 32.0 39.0 18.0 41.0 51 32.12493457142405 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 6.0 11 13.0 12 16.0 13 30.0 14 67.0 15 168.0 16 383.0 17 923.0 18 1751.0 19 3127.0 20 5397.0 21 8266.0 22 12591.0 23 18795.0 24 28127.0 25 41314.0 26 54059.0 27 62831.0 28 66869.0 29 70506.0 30 77590.0 31 87480.0 32 104149.0 33 136637.0 34 248884.0 35 249887.0 36 247057.0 37 252596.0 38 304523.0 39 378369.0 40 198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.453603475013693 16.638045260128585 23.025660996122404 31.882690268735313 2 33.43945384752512 19.562220393087166 26.748338855254733 20.249986904132975 3 25.24883162532095 20.738818058408786 35.28680354859419 18.72554676767607 4 23.358641180958895 23.29825806695257 32.34987771099675 20.993223041091785 5 21.376718756408344 31.803587171166843 30.88975960048875 15.929934471936063 6 78.94257675497815 2.1336720526888353 17.490474533309996 1.433276659023012 7 74.69805397446366 7.417905156685451 16.23623563464602 1.6478052342048615 8 73.7594153192813 3.6484476423175587 19.57265647936802 3.019480559033123 9 45.89498373473012 16.35817947550748 24.407366333835377 13.339470455927028 10 31.862142954890526 16.98698412943346 31.64038627325735 19.51048664241867 11 28.233917767700838 14.468638748579252 38.47699736336544 18.820446120354468 12 23.743679975180797 16.204602517086553 39.137475742190496 20.914241765542155 13 19.029736348726086 19.44937259629929 42.547030405557685 18.97386064941694 14 19.450672031166945 17.457460766203646 43.31820439217107 19.77366281045834 15 24.92608449006724 15.207732936897411 40.44101195114612 19.425170621889222 16 24.124861072139346 16.31866853406286 37.88230287471539 21.674167519082406 17 24.42243165683225 18.72603405575144 37.64519661870804 19.20633766870827 18 24.346536539093293 22.708111600339315 34.414233034964134 18.53111882560325 19 26.66663688795095 20.945428202365864 32.980550302544984 19.4073846071382 20 25.253217217999286 23.40050734810114 35.31242677989076 16.033848654008818 21 22.70855828107507 18.75458101550023 37.41304445813363 21.12381624529107 22 24.764223634365017 19.874815693437327 35.65048288217903 19.710477790018636 23 25.710374647376018 18.56786846795411 36.62509964025958 19.0966572444103 24 26.48280746151744 16.927372554879806 34.27543714816278 22.314382835439975 25 20.439338928754015 18.88294081602073 36.56467591891364 24.113044336311614 26 17.861463188025382 19.431545974208657 37.91556028585943 24.791430551906537 27 19.79230157934126 22.104686533672215 36.64105832472796 21.461953562258564 28 23.170101303130135 22.232396616758894 34.01213915810427 20.585362922006702 29 22.28027267016404 19.77561196275982 37.90881946748347 20.03529589959267 30 27.567957398027865 19.439545620112654 34.02290010310203 18.969596878757446 31 27.896024094771033 20.02989512342398 32.42402671313229 19.650054068672695 32 28.32861408368117 19.618177307075545 31.56989193168708 20.4833166775562 33 22.72861830684449 21.417853991437536 35.937170699855315 19.916357001862657 34 22.006173127768154 24.96778822785103 33.32400718100194 19.70203146337888 35 24.93091676348133 27.496488480306862 29.654281292726537 17.918313463485273 36 24.69515054968125 26.001975953145628 29.217874213892664 20.084999283280457 37 23.922189840124844 29.82747159618112 28.004689335578647 18.245649228115386 38 24.221993828496522 24.981229257263333 28.540462574448483 22.25631433979166 39 22.572726730065554 22.269227473788977 32.518398170395706 22.639647625749763 40 20.591738274326133 23.26824924297767 32.719160857448344 23.420851625247856 41 20.255225250943205 25.568533210103595 29.042897187495054 25.13334435145815 42 18.993108528394075 21.465851866861527 31.455582270673094 28.085457334071307 43 20.82681416335277 20.401005600158207 33.770525487399745 25.00165474908928 44 23.80418491120596 22.527287117037258 31.597058241888988 22.071469729867797 45 23.318318092721988 24.008602258823874 31.64152327876654 21.031556369687596 46 21.066113215699282 23.942858975988475 31.607372506151 23.383655302161245 47 20.85316832676239 24.414107152211333 33.64281540431307 21.08990911671321 48 23.322906722098395 23.448911296921274 32.534600498901774 20.69358148207856 49 20.978929257547584 21.908674905354445 34.555018681406594 22.557377155691384 50 20.101526470503437 22.49212116093135 35.963768507302625 21.442583861262587 51 19.79664656467998 20.566521116425708 34.61186895686647 25.024963362027837 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1185.0 1 13648.0 2 26111.0 3 95873.5 4 165636.0 5 99645.5 6 33655.0 7 29691.5 8 25728.0 9 25288.5 10 24849.0 11 24888.5 12 24928.0 13 24000.0 14 23072.0 15 21299.0 16 19526.0 17 18082.0 18 16638.0 19 15545.0 20 14452.0 21 13854.0 22 13256.0 23 13290.5 24 13325.0 25 13668.5 26 15123.0 27 16234.0 28 16269.5 29 16305.0 30 18511.5 31 20718.0 32 22889.5 33 25061.0 34 29882.5 35 34704.0 36 37137.5 37 39571.0 38 42326.0 39 45081.0 40 51009.5 41 56938.0 42 64090.0 43 71242.0 44 83238.0 45 95234.0 46 104974.5 47 114715.0 48 125376.0 49 136037.0 50 133310.5 51 130584.0 52 123773.0 53 116962.0 54 120219.5 55 123477.0 56 132308.5 57 141140.0 58 146459.5 59 151779.0 60 153287.0 61 154795.0 62 153328.0 63 151861.0 64 140544.5 65 129228.0 66 109786.5 67 90345.0 68 73545.5 69 56746.0 70 48566.5 71 40387.0 72 37426.5 73 34466.0 74 29538.0 75 19015.5 76 13421.0 77 10181.0 78 6941.0 79 5289.5 80 3638.0 81 3062.5 82 2487.0 83 1720.0 84 953.0 85 611.0 86 269.0 87 228.0 88 187.0 89 128.5 90 70.0 91 52.0 92 34.0 93 22.5 94 11.0 95 7.0 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2462609.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.870381033354548 #Duplication Level Percentage of deduplicated Percentage of total 1 76.80704903913184 22.174487718072847 2 8.862292085617092 5.117154986812956 3 2.933306793353727 2.540570544355485 4 1.5742508995623592 1.8179689324986588 5 0.9953628883836197 1.4368252927047727 6 0.7812835240062365 1.3533571819885233 7 0.6187143193146397 1.2503762704584371 8 0.5203680914759029 1.201858006280705 9 0.43584268155921785 1.1324649858492264 >10 5.767669072440109 37.79466274657665 >50 0.605429679607234 11.31759566717245 >100 0.0899690796280025 4.382238615922944 >500 0.0056412306132956926 1.106535546054085 >1k 0.0022268015578798786 1.3684473410008864 >5k 1.4845343719199192E-4 0.2572830150655617 >10k+ 4.4536031157597575E-4 5.7481731491859085 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 105805 4.296459567881056 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 16934 0.6876446890269629 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11379 0.4620709174700491 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6003 0.24376585970407808 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4763 0.19341275858246273 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4730 0.19207271637519394 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 3012 0.1223093069179882 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2914 0.11832978763579602 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2714 0.11020831971295483 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05668784610143145 0.0 2 0.0 0.0 0.0 0.17213451262461885 0.0 3 0.0 0.0 0.0 0.2665059698880334 0.0 4 0.0 0.0 0.0 0.33492933713797035 0.0 5 0.0 0.0 0.0 0.7028724413822901 0.0 6 0.0 0.0 0.0 0.8628247521226472 0.0 7 0.0 0.0 0.0 1.2610609317191646 0.0 8 0.0 0.0 0.0 1.723213063868442 0.0 9 0.0 0.0 0.0 2.142280808687047 0.0 10 0.0 0.0 0.0 2.4110201822538615 0.0 11 0.0 0.0 0.0 2.6789880163680064 0.0 12 0.0 0.0 0.0 2.8930699108141 0.0 13 0.0 0.0 0.0 3.0092881167899574 0.0 14 0.0 0.0 0.0 3.0877821042642175 0.0 15 0.0 0.0 0.0 3.287326571128425 0.0 16 0.0 0.0 0.0 3.5154992124206483 0.0 17 0.0 0.0 0.0 3.8113236815101383 0.0 18 0.0 0.0 0.0 3.9890620070015177 1.6242935845682364E-4 19 0.0 0.0 0.0 4.197702517939307 1.6242935845682364E-4 20 0.0 0.0 0.0 4.431519579437905 1.6242935845682364E-4 21 0.0 0.0 0.0 4.672848998765131 1.6242935845682364E-4 22 4.060733961420591E-5 0.0 0.0 4.906909704301413 1.6242935845682364E-4 23 4.060733961420591E-5 0.0 0.0 5.127651202444237 1.6242935845682364E-4 24 2.0303669807102956E-4 0.0 0.0 5.319561489460974 1.6242935845682364E-4 25 2.4364403768523547E-4 0.0 0.0 5.507370435176677 1.6242935845682364E-4 26 2.4364403768523547E-4 0.0 0.0 5.7116253534361325 1.6242935845682364E-4 27 3.248587169136473E-4 0.0 0.0 5.915636627657903 1.6242935845682364E-4 28 3.248587169136473E-4 0.0 0.0 6.118632718389318 1.6242935845682364E-4 29 3.248587169136473E-4 0.0 0.0 6.3352322678914925 1.6242935845682364E-4 30 3.248587169136473E-4 0.0 0.0 6.555770729336245 1.6242935845682364E-4 31 3.248587169136473E-4 0.0 0.0 6.788938073401015 1.6242935845682364E-4 32 3.248587169136473E-4 0.0 0.0 7.045576459762796 1.6242935845682364E-4 33 3.248587169136473E-4 0.0 0.0 7.2942558075601935 1.6242935845682364E-4 34 3.248587169136473E-4 0.0 0.0 7.590445742706211 1.6242935845682364E-4 35 3.248587169136473E-4 0.0 0.0 7.850698182293657 1.6242935845682364E-4 36 3.248587169136473E-4 0.0 0.0 8.132797370593545 1.6242935845682364E-4 37 3.248587169136473E-4 0.0 0.0 8.528515895133982 1.6242935845682364E-4 38 3.248587169136473E-4 0.0 0.0 8.936132370181381 1.6242935845682364E-4 39 3.248587169136473E-4 0.0 0.0 9.405878074838515 1.6242935845682364E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAT 20 7.03486E-4 45.0 15 TACGTAG 20 7.03486E-4 45.0 15 CGTTTTT 28955 0.0 44.106373 1 CGTTTTA 1510 0.0 43.21192 1 CATATGC 1370 0.0 41.058395 32 TCACGAC 410 0.0 40.060974 24 ACGGGAT 360 0.0 40.0 4 GCCAGTA 1420 0.0 39.929577 24 GTTGATC 1455 0.0 39.896904 15 TAGTCAG 465 0.0 39.67742 33 CGCACTT 5155 0.0 39.544132 34 CGGTCTA 410 0.0 39.51219 30 ATAGCGG 365 0.0 39.452057 1 CACTTAC 5150 0.0 39.451454 36 CTAGCGG 755 0.0 39.33775 1 ACTTACT 5150 0.0 39.23301 37 TAACGGG 660 0.0 39.204544 2 ATTACGG 230 0.0 39.130432 1 GCACTTA 5215 0.0 39.002876 35 CCGCACT 5240 0.0 38.98855 33 >>END_MODULE