SRR1043460_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043460_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1231088
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83078	6.748339680022875	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8389	0.6814297596922397	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3421	0.27788427797200527	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1826	0.14832408406222788	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1575	0.12793561467579895	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1457	0.1183505971953264	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGT	20	7.0334814E-4	45.000004	33
GACGTGT	40	6.8157533E-9	45.000004	43
CCATCGG	20	7.0334814E-4	45.000004	1
CTTGCGG	310	0.0	45.000004	1
CATACGG	60	0.0	45.000004	1
ATGCGAT	20	7.0334814E-4	45.000004	32
CGAGAAT	40	6.8157533E-9	45.000004	5
GAACACG	20	7.0334814E-4	45.000004	8
TCGACTA	20	7.0334814E-4	45.000004	27
CTTACGT	20	7.0334814E-4	45.000004	31
CGGACTG	20	7.0334814E-4	45.000004	5
TCTGCGA	25	3.8909686E-5	45.0	1
CGTGACG	25	3.8909686E-5	45.0	11
TGCGGAT	25	3.8909686E-5	45.0	33
AGCGCAA	25	3.8909686E-5	45.0	13
TCGTCGA	25	3.8909686E-5	45.0	31
AGCGATA	25	3.8909686E-5	45.0	7
TCCCGTA	55	1.8189894E-12	45.0	29
CCGAATC	25	3.8909686E-5	45.0	21
CATCCGG	55	1.8189894E-12	45.0	1