SRR1043459_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043459_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4296778
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	118887	2.7668871884933317	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	44592	1.0378008824286478	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17131	0.39869409124697625	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13928	0.3241498629903616	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12911	0.3004809650393853	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8292	0.19298181102211936	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8065	0.18769878266924658	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	7253	0.16880090151271487	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5163	0.12015980346203596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAT	20	7.035447E-4	45.0	14
CGTTTTT	33415	0.0	43.88224	1
TATACGG	245	0.0	42.2449	1
TTCCGTA	615	0.0	41.341465	45
ACTTACT	13515	0.0	40.738068	37
CACTTAC	13595	0.0	40.531445	36
CGTTTTA	1815	0.0	40.413223	1
CTTACTG	13650	0.0	40.25275	38
CGCACTT	13705	0.0	40.222546	34
ACCCGCA	13735	0.0	39.987263	31
CCGCACT	13770	0.0	39.95098	33
GCACTTA	13870	0.0	39.67916	35
CCCGCAC	13940	0.0	39.673603	32
TTATGAC	14355	0.0	39.373043	26
CTTATGA	14400	0.0	39.25	25
GCGCGAC	5370	0.0	39.217876	8
CAACGCA	14705	0.0	39.185654	16
CGGTCTA	1005	0.0	39.179104	30
AGGGTAC	2125	0.0	39.176468	5
TAGCATA	4665	0.0	39.163986	29