SRR1043458_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043458_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	964321
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64408	6.679103742426018	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7273	0.7542094385583225	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2822	0.29264114335371727	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1444	0.1497426686756796	No Hit
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	1153	0.11956599514062226	TruSeq Adapter, Index 14 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGCT	1079	0.11189220187053896	Illumina PCR Primer Index 3 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTT	35	1.211647E-7	45.000004	1
CGCGATA	35	1.211647E-7	45.000004	10
TCAGGTT	35	1.211647E-7	45.000004	33
GCCGCAA	35	1.211647E-7	45.000004	31
CCGTTGG	35	1.211647E-7	45.000004	1
ATTTACG	20	7.032722E-4	45.0	10
CCGGGTA	40	6.8139343E-9	45.0	4
CGAACTC	25	3.8903367E-5	45.0	33
AGATCCG	20	7.032722E-4	45.0	9
GCGACTA	20	7.032722E-4	45.0	9
CGTATCG	25	3.8903367E-5	45.0	10
ATTAGCG	20	7.032722E-4	45.0	11
GGTCGTA	25	3.8903367E-5	45.0	7
GCGAACT	25	3.8903367E-5	45.0	32
CGGCCCA	20	7.032722E-4	45.0	45
GGATCGT	20	7.032722E-4	45.0	7
TCGATGG	85	0.0	45.0	1
ACTTACG	20	7.032722E-4	45.0	9
TGGCACG	25	3.8903367E-5	45.0	10
CTAACGG	50	2.1827873E-11	45.0	1