##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043458_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 964321 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.614052789475704 31.0 31.0 34.0 30.0 34.0 2 30.60510452432333 31.0 31.0 34.0 26.0 34.0 3 31.525242113362665 31.0 31.0 34.0 28.0 34.0 4 35.13821746078329 37.0 35.0 37.0 32.0 37.0 5 35.4735103767314 37.0 35.0 37.0 33.0 37.0 6 35.9032718358306 37.0 35.0 37.0 35.0 37.0 7 33.7183323810225 37.0 35.0 37.0 32.0 37.0 8 34.79922142108281 37.0 35.0 37.0 31.0 37.0 9 36.868536514293474 39.0 37.0 39.0 32.0 39.0 10 36.80557304051244 39.0 35.0 39.0 32.0 39.0 11 36.527038195787505 39.0 35.0 39.0 33.0 39.0 12 36.419809378827175 39.0 35.0 39.0 32.0 39.0 13 36.46670869969647 39.0 35.0 39.0 32.0 39.0 14 37.83501655569048 40.0 36.0 41.0 33.0 41.0 15 38.004181180333106 40.0 36.0 41.0 33.0 41.0 16 37.98519165298692 40.0 36.0 41.0 33.0 41.0 17 37.95430567207393 40.0 36.0 41.0 33.0 41.0 18 37.632741587085626 39.0 36.0 41.0 33.0 41.0 19 37.27164398576822 38.0 35.0 41.0 33.0 41.0 20 36.92824277393109 38.0 35.0 40.0 33.0 41.0 21 36.82066034028088 38.0 35.0 40.0 33.0 41.0 22 36.748595125482076 38.0 35.0 40.0 33.0 41.0 23 36.645014471322305 37.0 35.0 40.0 33.0 41.0 24 36.485874516888046 37.0 35.0 40.0 32.0 41.0 25 36.382174607832866 37.0 35.0 40.0 32.0 41.0 26 36.1190526805908 36.0 35.0 40.0 32.0 41.0 27 36.03080405798484 36.0 35.0 40.0 31.0 41.0 28 35.96555089021187 36.0 35.0 40.0 31.0 41.0 29 35.8735058139354 36.0 35.0 40.0 31.0 41.0 30 35.671261955303265 36.0 35.0 40.0 31.0 41.0 31 35.18961839470467 35.0 35.0 40.0 29.0 41.0 32 34.980535527070344 35.0 34.0 40.0 27.0 41.0 33 34.800843287660435 36.0 34.0 40.0 25.0 41.0 34 34.58359923718347 36.0 34.0 40.0 24.0 41.0 35 34.32129239122657 35.0 34.0 40.0 22.0 41.0 36 34.144007026705836 35.0 34.0 40.0 21.0 41.0 37 34.05130864100232 35.0 34.0 40.0 21.0 41.0 38 33.944387812771886 35.0 34.0 40.0 21.0 41.0 39 33.796668329321875 35.0 33.0 40.0 20.0 41.0 40 33.74556397714039 35.0 33.0 40.0 20.0 41.0 41 33.64036353040118 35.0 33.0 40.0 18.0 41.0 42 33.54581099032376 35.0 33.0 40.0 18.0 41.0 43 33.35472524190596 35.0 33.0 40.0 18.0 41.0 44 33.17327321503939 35.0 33.0 40.0 18.0 41.0 45 32.95723519450473 35.0 33.0 40.0 15.0 41.0 46 32.95881039612328 35.0 33.0 40.0 17.0 41.0 47 32.929629241715155 35.0 33.0 40.0 17.0 41.0 48 32.87650896330164 35.0 33.0 40.0 15.0 41.0 49 32.780281669692975 35.0 33.0 40.0 15.0 41.0 50 32.644484564787035 35.0 33.0 39.0 15.0 41.0 51 32.199568400978514 35.0 32.0 39.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 12.0 14 20.0 15 32.0 16 96.0 17 226.0 18 471.0 19 874.0 20 1573.0 21 2585.0 22 4438.0 23 7130.0 24 11617.0 25 17629.0 26 22004.0 27 23840.0 28 23123.0 29 23665.0 30 25253.0 31 29827.0 32 36432.0 33 48552.0 34 84627.0 35 123696.0 36 110063.0 37 86556.0 38 108659.0 39 171204.0 40 111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.982470567373312 18.75516555171981 25.35493886371862 31.907425017188263 2 33.1824153990217 20.01657124546702 29.099335179883045 17.701678175628242 3 20.057740109361923 21.042992945295186 41.074393277757096 17.824873667585795 4 21.35378157273356 23.3656635083131 38.26682193999716 17.013732978956178 5 18.90407862112305 30.747748934224184 35.2496730860367 15.098499358616063 6 75.55305753996853 1.911811523341294 21.175106629431486 1.3600243072586826 7 71.71284250783711 7.817728743851891 18.899101025488402 1.570327722822587 8 70.53481154097028 4.198498217917063 22.530982940327963 2.7357073007846973 9 39.4247351245073 22.041311969769403 27.934163001739048 10.599789903984254 10 29.990013698757984 22.606994973665408 37.54071517679279 9.862276150783817 11 28.17526529029234 21.1864099195185 38.253029852092816 12.385294938096338 12 18.385890175574314 29.93142325014181 38.09965768660021 13.583028887683666 13 13.842278660321613 32.7680305624372 37.72467881545668 15.665011961784508 14 12.328156288206936 25.103362884350748 47.230642078726895 15.337838748715418 15 14.371562996139254 22.025342183774903 47.224420084183585 16.37867473590226 16 15.530202080012776 23.63103157558531 37.94006352656429 22.89870281783763 17 16.793266972304867 24.303214386080985 42.3267770794165 16.57674156219765 18 20.638252200252822 26.032825169212327 37.724367715729514 15.604554914805341 19 21.79160258876453 24.794129755548205 37.517797496891596 15.896470158795669 20 16.925173256623054 28.84589260215219 38.543182197629214 15.685751943595546 21 17.274330850411847 26.745139844512355 36.908871630919585 19.07165767415622 22 14.118742617862722 28.934970824030586 36.35034392074838 20.59594263735831 23 13.370340374211493 25.5227253165699 46.83616762468099 14.270766684537616 24 14.046463781251264 26.44389160870706 43.315659412166696 16.193985197874984 25 13.60656876703919 31.191999344616573 38.785943684727386 16.415488203616846 26 12.907942479734446 32.22402083953372 38.3217828917964 16.546253788935427 27 13.57089599832421 28.988168877375898 42.67469027429663 14.766244850003266 28 12.658025698911462 26.234002992779377 41.68197104491139 19.426000263397768 29 14.055278273520955 30.59997656382055 40.13632390044394 15.208421262214552 30 18.82734068842222 29.620012423249104 36.56707673067371 14.985570157654971 31 18.98475715036798 28.032366815614303 37.478391531450626 15.504484502567092 32 18.641095651759112 30.425449616880684 35.91366360371702 15.019791127643181 33 14.479410901556639 29.08336539388855 36.953981091358585 19.48324261319623 34 15.870337781713765 27.879098350030745 38.20906109065342 18.041502777602066 35 20.602475731628783 28.11999323876593 35.46132460041832 15.81620642918696 36 16.578193360924423 31.329401724114685 35.53878843248254 16.553616482478343 37 16.212028982050583 30.38231045471373 36.621933982563895 16.78372658067179 38 15.980881884766587 31.66404133063575 35.212963318231175 17.14211346636649 39 19.093227255239697 28.741259393915513 33.94326163175955 18.222251719085243 40 14.56568922589055 27.51905226579116 37.13908542902208 20.77617307929621 41 16.131350452805655 28.32262286105975 34.73044764139742 20.815579044737177 42 16.271137930212035 28.16385830029627 35.94809197352334 19.616911795968356 43 15.812680632279086 29.240367056198092 35.979616745876115 18.96733556564671 44 14.311728148614414 34.299159719636926 33.250027739725674 18.13908439202299 45 16.85787201564624 31.313950437665465 34.32964749289915 17.498530053789143 46 16.66758268252999 29.78489527864684 34.52678102001305 19.020741018810128 47 15.330061255536279 28.099149557045838 37.78161006552797 18.78917912188991 48 16.355964455819173 26.925681386177423 37.17040280155675 19.54795135644666 49 17.045361451218007 29.779399183466914 35.50767845976599 17.667560905549085 50 15.019272628097905 29.41313110468402 35.05482095692202 20.512775310296053 51 15.038871910909336 27.461809915992703 36.9162343244625 20.583083848635464 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1321.0 1 7052.5 2 12784.0 3 46601.0 4 80418.0 5 47526.0 6 14634.0 7 14487.0 8 14340.0 9 16176.0 10 18012.0 11 19736.5 12 21461.0 13 21279.0 14 21097.0 15 19043.0 16 16989.0 17 14840.5 18 12692.0 19 11227.0 20 9762.0 21 9363.0 22 8964.0 23 8149.5 24 7335.0 25 7452.0 26 8162.0 27 8755.0 28 9531.5 29 10308.0 30 12328.0 31 14348.0 32 16284.5 33 18221.0 34 21500.0 35 24779.0 36 27990.5 37 31202.0 38 32895.0 39 34588.0 40 40694.5 41 46801.0 42 56215.0 43 65629.0 44 68930.0 45 72231.0 46 73813.0 47 75395.0 48 74265.0 49 73135.0 50 69645.0 51 66155.0 52 57431.5 53 48708.0 54 41867.0 55 35026.0 56 30389.5 57 25753.0 58 22631.5 59 19510.0 60 17133.0 61 14756.0 62 12434.0 63 10112.0 64 8264.5 65 6417.0 66 5446.5 67 4476.0 68 3657.5 69 2839.0 70 2634.5 71 2430.0 72 2296.5 73 2163.0 74 1808.0 75 1157.0 76 861.0 77 665.5 78 470.0 79 340.5 80 211.0 81 144.0 82 77.0 83 65.0 84 53.0 85 52.0 86 51.0 87 37.5 88 24.0 89 14.5 90 5.0 91 2.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 964321.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.35836859721693 #Duplication Level Percentage of deduplicated Percentage of total 1 78.69083623967664 27.03688756746046 2 9.646462433042352 6.628734238673505 3 3.411993970173687 3.516916394361274 4 1.759336604590777 2.4179174218842405 5 1.107871693613506 1.9032332003797912 6 0.7298647805604169 1.5046177893972996 7 0.5717940943200298 1.3752138578051585 8 0.4070405365137201 1.1188199030037866 9 0.32580365772924025 1.0074673946324468 >10 2.501315681524515 18.505198818235623 >50 0.6298844683818559 15.223661801150303 >100 0.21215508430820895 10.471293123168818 >500 0.003760503710041311 0.8724552268518598 >1k 0.001253501236680437 0.6996438435250383 >5k 3.1337530917010923E-4 0.7830885924834724 >10k+ 3.1337530917010923E-4 6.934850826986867 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 64408 6.679103742426018 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7273 0.7542094385583225 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2822 0.29264114335371727 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1444 0.1497426686756796 No Hit CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC 1153 0.11956599514062226 TruSeq Adapter, Index 14 (96% over 25bp) CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGCT 1079 0.11189220187053896 Illumina PCR Primer Index 3 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1172845971414083 0.0 2 0.0 0.0 0.0 0.38514146223093765 0.0 3 0.0 0.0 0.0 0.6174292585145403 0.0 4 0.0 0.0 0.0 0.7825195137303864 0.0 5 0.0 0.0 0.0 1.7021303072317207 0.0 6 0.0 0.0 0.0 1.9335885042428818 0.0 7 0.0 0.0 0.0 2.6416514832716493 0.0 8 0.0 0.0 0.0 3.488050140980026 0.0 9 0.0 0.0 0.0 4.09894630522409 0.0 10 0.0 0.0 0.0 4.553359306703888 0.0 11 0.0 0.0 0.0 5.076214248160104 0.0 12 0.0 0.0 0.0 5.511857566100915 0.0 13 0.0 0.0 0.0 5.700591400581342 0.0 14 0.0 0.0 0.0 5.844215774622766 0.0 15 0.0 0.0 0.0 6.36302641962583 0.0 16 0.0 0.0 0.0 6.97703358114155 0.0 17 0.0 0.0 0.0 7.725643224610892 0.0 18 0.0 0.0 0.0 8.115036383113091 0.0 19 0.0 0.0 0.0 8.540102310330274 0.0 20 0.0 0.0 0.0 9.02251428725497 0.0 21 2.0739981811035952E-4 0.0 0.0 9.490719376639106 0.0 22 3.110997271655393E-4 0.0 0.0 9.969190757019707 0.0 23 0.001762898453938056 0.0 0.0 10.349562023434105 0.0 24 0.003007297362600213 0.0 0.0 10.679638833956743 0.0 25 0.003007297362600213 0.0 0.0 10.985760965487634 0.0 26 0.003007297362600213 0.0 0.0 11.338133256457134 0.0 27 0.003007297362600213 0.0 0.0 11.663439871163233 0.0 28 0.003007297362600213 0.0 0.0 12.031263448581955 0.0 29 0.003007297362600213 0.0 0.0 12.458714473707406 0.0 30 0.003007297362600213 0.0 0.0 12.861692320295836 0.0 31 0.003007297362600213 0.0 0.0 13.212405412720454 0.0 32 0.003007297362600213 0.0 0.0 13.577843892230906 0.0 33 0.003007297362600213 0.0 0.0 13.94068987401498 0.0 34 0.003007297362600213 0.0 0.0 14.368451998867597 0.0 35 0.003007297362600213 0.0 0.0 14.74529746837412 0.0 36 0.003007297362600213 0.0 0.0 15.106380551704255 0.0 37 0.003007297362600213 0.0 0.0 15.497329208842284 0.0 38 0.003007297362600213 0.0 0.0 15.8850631687996 0.0 39 0.003007297362600213 0.0 0.0 16.303492301837252 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTT 35 1.211647E-7 45.000004 1 CGCGATA 35 1.211647E-7 45.000004 10 TCAGGTT 35 1.211647E-7 45.000004 33 GCCGCAA 35 1.211647E-7 45.000004 31 CCGTTGG 35 1.211647E-7 45.000004 1 ATTTACG 20 7.032722E-4 45.0 10 CCGGGTA 40 6.8139343E-9 45.0 4 CGAACTC 25 3.8903367E-5 45.0 33 AGATCCG 20 7.032722E-4 45.0 9 GCGACTA 20 7.032722E-4 45.0 9 CGTATCG 25 3.8903367E-5 45.0 10 ATTAGCG 20 7.032722E-4 45.0 11 GGTCGTA 25 3.8903367E-5 45.0 7 GCGAACT 25 3.8903367E-5 45.0 32 CGGCCCA 20 7.032722E-4 45.0 45 GGATCGT 20 7.032722E-4 45.0 7 TCGATGG 85 0.0 45.0 1 ACTTACG 20 7.032722E-4 45.0 9 TGGCACG 25 3.8903367E-5 45.0 10 CTAACGG 50 2.1827873E-11 45.0 1 >>END_MODULE