SRR1043457_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043457_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3749530
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	144791	3.8615773176904837	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	32521	0.8673353727000451	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15156	0.40421066106952075	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12066	0.32180033230831595	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9107	0.2428837747664374	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6214	0.1657274378388758	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5457	0.14553824079284605	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5321	0.1419111195269807	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4038	0.10769349758503065	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTCGA	35	1.2129203E-7	45.0	42
CGTTTTT	39500	0.0	43.968987	1
ACGTAGG	280	0.0	41.785713	1
CGCACTT	9440	0.0	40.876587	34
CACTTAC	9510	0.0	40.764984	36
CGTTTTA	2175	0.0	40.75862	1
TAGCATA	3430	0.0	40.73615	29
ACCCGCA	9530	0.0	40.537773	31
GCACTTA	9535	0.0	40.516518	35
CCGCACT	9535	0.0	40.469326	33
CCCGCAC	9630	0.0	40.420563	32
TAGTAGG	705	0.0	40.21277	1
CCAGTAG	3515	0.0	40.199146	25
ACTTACT	9590	0.0	40.096455	37
TCAACGC	10145	0.0	40.032036	15
CTTACTG	9630	0.0	39.92991	38
TACGGGA	745	0.0	39.865772	3
CTTATGA	9950	0.0	39.84422	25
ATCAACG	10210	0.0	39.799217	14
CAACGCA	10200	0.0	39.75	16