SRR1043456_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043456_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1124666
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	77781	6.915919926449275	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8197	0.7288386063062278	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3297	0.293153700743154	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1550	0.13781869461689072	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1441	0.12812692835028355	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	30	2.1654596E-6	45.000004	37
GCAACCG	30	2.1654596E-6	45.000004	35
ACCGTGG	30	2.1654596E-6	45.000004	1
ACCGTAG	30	2.1654596E-6	45.000004	38
TTACCGG	75	0.0	45.000004	1
CAATACG	30	2.1654596E-6	45.000004	23
TCGCCGT	35	1.2119017E-7	45.0	24
CAGCGTT	25	3.890753E-5	45.0	22
GGTACGC	25	3.890753E-5	45.0	7
CAACGTC	25	3.890753E-5	45.0	26
CGACGGT	295	0.0	45.0	27
GCGCGAA	20	7.0332224E-4	45.0	32
CGGTTAG	20	7.0332224E-4	45.0	30
CAACCGG	35	1.2119017E-7	45.0	1
ATTCGCG	20	7.0332224E-4	45.0	10
CGTTCGA	35	1.2119017E-7	45.0	13
TACGACC	20	7.0332224E-4	45.0	32
GTCGTCG	35	1.2119017E-7	45.0	24
AACGATG	20	7.0332224E-4	45.0	28
GCGATAT	145	0.0	45.0	8