SRR1043455_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043455_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3747207
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	112816	3.0106690129475098	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	30101	0.8032916249355853	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11747	0.3134868183156148	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11177	0.29827548891747907	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8621	0.230064685511102	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6459	0.17236837996940121	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5150	0.1374356954392965	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4697	0.1253466915491992	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4320	0.11528586491218659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTTA	20	7.0353306E-4	45.0	41
CGTAATC	20	7.0353306E-4	45.0	33
CGTTTTT	31605	0.0	43.860943	1
TCTACGG	330	0.0	42.272728	1
CTTACTG	9295	0.0	40.812267	38
CACTTAC	9340	0.0	40.6879	36
CGCACTT	9335	0.0	40.66149	34
ACTTACT	9340	0.0	40.54336	37
CCGCACT	9440	0.0	40.209217	33
GCACTTA	9460	0.0	40.171776	35
ACTACGG	185	0.0	40.135136	1
GGGTACC	3390	0.0	39.955753	6
CCCGCAC	9560	0.0	39.93985	32
TATACGG	220	0.0	39.886364	1
ACCCGCA	9540	0.0	39.882072	31
ACGACCA	740	0.0	39.83108	27
CCAGTAG	3455	0.0	39.659912	25
GTTGATC	3560	0.0	39.56461	15
CATATGC	3330	0.0	39.527027	32
AACACGT	695	0.0	39.496403	40