##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043455_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3747207 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.541683712695882 31.0 31.0 33.0 30.0 34.0 2 30.597735593470016 31.0 31.0 34.0 26.0 34.0 3 31.569973849856705 31.0 31.0 34.0 28.0 34.0 4 35.188130786476435 37.0 35.0 37.0 33.0 37.0 5 35.50662933753059 37.0 35.0 37.0 33.0 37.0 6 35.76293863669661 37.0 35.0 37.0 35.0 37.0 7 33.776214658010616 37.0 35.0 37.0 32.0 37.0 8 34.758076615463196 37.0 35.0 37.0 32.0 37.0 9 36.785942436593444 39.0 37.0 39.0 32.0 39.0 10 36.71667591355375 39.0 35.0 39.0 32.0 39.0 11 36.49156264919446 39.0 35.0 39.0 32.0 39.0 12 36.49358175302299 39.0 35.0 39.0 32.0 39.0 13 36.513915030581444 39.0 35.0 39.0 32.0 39.0 14 37.6919396232981 40.0 36.0 41.0 33.0 41.0 15 37.76706784546464 40.0 36.0 41.0 33.0 41.0 16 37.577548024435266 40.0 35.0 41.0 32.0 41.0 17 37.50996675657363 40.0 36.0 41.0 32.0 41.0 18 37.362486246423 39.0 35.0 41.0 32.0 41.0 19 37.21331380945862 39.0 35.0 41.0 32.0 41.0 20 36.958623315979075 38.0 35.0 41.0 32.0 41.0 21 36.869015509418084 38.0 35.0 41.0 32.0 41.0 22 36.82303993347578 38.0 35.0 40.0 32.0 41.0 23 36.78043246610075 38.0 35.0 40.0 32.0 41.0 24 36.6618945790825 38.0 35.0 40.0 32.0 41.0 25 36.56027676079811 38.0 35.0 40.0 31.0 41.0 26 36.29050036467161 38.0 35.0 40.0 31.0 41.0 27 36.14584969551989 38.0 35.0 40.0 31.0 41.0 28 35.97788459511311 37.0 35.0 40.0 30.0 41.0 29 35.88115601833579 37.0 35.0 40.0 30.0 41.0 30 35.73814150112337 37.0 34.0 40.0 30.0 41.0 31 35.55681097948418 37.0 34.0 40.0 29.0 41.0 32 35.461740704476696 37.0 34.0 40.0 28.0 41.0 33 35.15785997410872 37.0 34.0 40.0 26.0 41.0 34 35.058050969695564 37.0 34.0 40.0 26.0 41.0 35 34.910835990645836 37.0 34.0 40.0 25.0 41.0 36 34.818875498471265 37.0 34.0 40.0 25.0 41.0 37 34.69736152819954 37.0 34.0 40.0 24.0 41.0 38 34.58355596581667 36.0 34.0 40.0 24.0 41.0 39 34.47496095091624 36.0 34.0 40.0 23.0 41.0 40 34.36246142793819 36.0 34.0 40.0 23.0 41.0 41 34.25534618183623 35.0 33.0 40.0 23.0 41.0 42 34.12695882559997 35.0 33.0 40.0 23.0 41.0 43 33.93835061687278 35.0 33.0 40.0 23.0 41.0 44 33.705542021030595 35.0 33.0 40.0 22.0 41.0 45 33.46893379522402 35.0 33.0 40.0 21.0 41.0 46 33.455896351602675 35.0 33.0 39.0 22.0 41.0 47 33.41470086920739 35.0 33.0 39.0 22.0 41.0 48 33.32076183674934 35.0 33.0 39.0 22.0 41.0 49 33.268209629198495 35.0 33.0 39.0 22.0 41.0 50 33.19930204015951 35.0 33.0 39.0 22.0 41.0 51 32.76505754819523 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 3.0 10 6.0 11 9.0 12 25.0 13 36.0 14 89.0 15 206.0 16 471.0 17 1017.0 18 2046.0 19 3620.0 20 6136.0 21 9867.0 22 15016.0 23 22803.0 24 33887.0 25 50590.0 26 66892.0 27 81050.0 28 88861.0 29 95074.0 30 106165.0 31 122669.0 32 149875.0 33 197827.0 34 358859.0 35 376783.0 36 377691.0 37 428851.0 38 524840.0 39 625577.0 40 362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.52820594111828 17.68287687336195 24.41498428029196 28.37393290522781 2 31.161102122193945 20.85139678699362 27.282800229611016 20.704700861201424 3 26.373616402830162 21.776699285627934 32.02801446517366 19.82166984636824 4 23.84789524571234 24.543133058835554 29.138769221983203 22.470202473468905 5 22.211823366043028 33.74257146722879 27.2926742504484 16.75293091627978 6 83.19294877491423 2.2901857303319515 13.041286483506248 1.475579011247577 7 79.07948506714467 7.145962312730522 12.219047413180004 1.5555052069447992 8 78.15047313906064 3.6603528975047284 15.029167056957354 3.1600069064772778 9 47.08434842270523 17.020783746400987 21.09248301468267 14.802384816211115 10 30.725390937837165 17.577518402372753 28.835183111047773 22.861907548742302 11 26.59989159926313 14.7652371486283 38.12861152319581 20.50625972891276 12 22.925448207158023 16.66398466911489 38.185053561225736 22.22551356250135 13 19.356389972584914 19.765094375624297 40.962508876611295 19.916006775179486 14 19.916060148265093 17.9361054780267 41.16439257292164 20.983441800786558 15 24.677739980737652 15.241698683846394 38.65364256631673 21.426918769099228 16 24.710430995672244 16.242710904414942 34.61354016471468 24.433317935198133 17 24.438094826360008 19.40095649906717 34.998386798487516 21.16256187608531 18 26.083240130582592 22.236508418136495 31.022572278499695 20.657679172781222 19 27.155985778207608 20.826845167614174 30.407207287988093 21.609961766190125 20 27.046304087284213 22.018132438373435 33.06521363778408 17.87034983655827 21 24.463607161280386 18.22013035308698 33.78551011460002 23.530752371032612 22 26.117665770799427 19.570282613156945 32.32095264553039 21.99109897051324 23 26.32309877730267 18.91072470776234 33.374217116908675 21.391959398026316 24 27.773592438314726 17.373126171038855 31.51742084170957 23.33586054893685 25 22.278459663423984 19.182367026961682 32.521235149272506 26.017938160341824 26 20.76701393864817 19.396206294448103 34.207851341012116 25.628928425891605 27 21.884059247327407 21.132192590374643 34.208224952611374 22.775523209686575 28 24.408659569647472 22.33012481029204 31.394796177526356 21.86641944253413 29 23.725510760414355 19.71986068557195 35.15092707715373 21.403701476859965 30 28.883699245864985 19.668996134988006 30.725817922522026 20.72148669662498 31 29.931039304740835 20.255859897785204 29.779619860872376 20.03348093660158 32 29.858104983258198 18.87245620538177 29.045099456742047 22.224339354617985 33 24.860275933515283 21.665309655965096 32.43882710509454 21.03558730542508 34 24.86852207524164 23.193407783450446 30.979500198414446 20.95856994289347 35 26.86865177183967 26.361740891282494 27.66879438472441 19.100812952153433 36 25.869107311125326 24.574970104400425 27.31372993272056 22.242192651753694 37 25.392245477765172 28.200817302059907 26.371908464090723 20.0350287560842 38 24.795427634502175 24.02578774004212 26.6538251022695 24.5249595231862 39 24.35891585386129 21.5022548794342 30.56754003715301 23.571289229551503 40 22.111588711272155 22.76588936773442 30.511951968492802 24.610569952500622 41 22.05093019947924 26.004568202397145 26.634130433680337 25.31037116444328 42 21.548182419599453 21.092376268511455 28.550144147360957 28.809297164528143 43 22.473378172062553 20.164378429053958 32.08627118811424 25.275972210769247 44 25.07827830167909 22.052184466991015 30.28925276879553 22.58028446253436 45 25.254462857269427 23.114308870580142 30.047552750621996 21.583675521528434 46 23.30055425280749 23.476632062226614 29.53076784922744 23.69204583573846 47 22.292763650366794 24.64088586512568 31.28487430771772 21.78147617678981 48 24.402521664802613 23.51377972980943 30.44230009177502 21.641398513612938 49 22.60755810927979 21.87066260283993 32.29837583031842 23.223403457561858 50 21.802772037947197 22.770319333839844 33.5674810598934 21.85942756831955 51 21.241020311928324 20.654636906901594 32.69160203853163 25.41274074263845 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1771.0 1 15107.0 2 28443.0 3 102527.0 4 176611.0 5 107363.0 6 38115.0 7 33861.0 8 29607.0 9 28935.0 10 28263.0 11 28165.5 12 28068.0 13 26840.0 14 25612.0 15 23804.0 16 21996.0 17 20359.5 18 18723.0 19 17197.5 20 15672.0 21 15593.5 22 15515.0 23 15412.5 24 15310.0 25 16533.0 26 18975.0 27 20194.0 28 21987.0 29 23780.0 30 27794.5 31 31809.0 32 36562.5 33 41316.0 34 46415.5 35 51515.0 36 57074.5 37 62634.0 38 66927.0 39 71220.0 40 78593.5 41 85967.0 42 97463.0 43 108959.0 44 122991.5 45 137024.0 46 148820.0 47 160616.0 48 185555.5 49 210495.0 50 211993.0 51 213491.0 52 197693.0 53 181895.0 54 192395.0 55 202895.0 56 217444.0 57 231993.0 58 244734.5 59 257476.0 60 263048.0 61 268620.0 62 257852.5 63 247085.0 64 228943.5 65 210802.0 66 178693.5 67 146585.0 68 123468.0 69 100351.0 70 86925.5 71 73500.0 72 67101.0 73 60702.0 74 50571.5 75 31617.0 76 22793.0 77 17010.5 78 11228.0 79 8446.0 80 5664.0 81 4231.5 82 2799.0 83 1966.5 84 1134.0 85 793.0 86 452.0 87 317.0 88 182.0 89 121.5 90 61.0 91 49.0 92 37.0 93 30.0 94 23.0 95 13.5 96 4.0 97 3.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3747207.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.552698659929558 #Duplication Level Percentage of deduplicated Percentage of total 1 77.66317193239497 18.29177285497998 2 9.109396960069525 4.291017631483918 3 2.8566311068655748 2.0184411492775776 4 1.3428530962471759 1.2651125728185248 5 0.8617065364156566 1.0147757192744788 6 0.561753398568128 0.7938485110599854 7 0.4532807194744565 0.7473188935896556 8 0.358147904775311 0.6748279741486437 9 0.2957848173864318 0.6269877604876428 >10 4.693144218234723 27.623531371143144 >50 1.464083157433866 23.984141636952096 >100 0.329471070780799 10.98373200685542 >500 0.006928501576411637 1.1315585192299313 >1k 0.0027957111624116867 1.225919477595055 >5k 3.646579777058722E-4 0.5791632851112296 >10k+ 4.8621063694116295E-4 4.7478506359926556 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 112816 3.0106690129475098 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 30101 0.8032916249355853 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11747 0.3134868183156148 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 11177 0.29827548891747907 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8621 0.230064685511102 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6459 0.17236837996940121 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5150 0.1374356954392965 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4697 0.1253466915491992 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 4320 0.11528586491218659 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03421214787440352 0.0 2 0.0 0.0 0.0 0.11339112037312056 0.0 3 0.0 0.0 0.0 0.1846441896591248 0.0 4 0.0 0.0 0.0 0.23219960893540176 0.0 5 0.0 0.0 0.0 0.506003538101845 0.0 6 0.0 0.0 0.0 0.6111485167486077 0.0 7 0.0 0.0 0.0 0.9006975061692616 0.0 8 0.0 0.0 0.0 1.2128766838874927 0.0 9 0.0 0.0 0.0 1.5045605967324462 0.0 10 0.0 0.0 0.0 1.6942485429814793 0.0 11 0.0 0.0 0.0 1.8746495723348082 0.0 12 0.0 0.0 0.0 2.0211853788701823 0.0 13 0.0 0.0 0.0 2.0957475794638514 0.0 14 0.0 0.0 0.0 2.154164421661253 0.0 15 0.0 0.0 0.0 2.313589828370837 0.0 16 0.0 0.0 0.0 2.4881731913929497 2.6686542803746898E-5 17 0.0 0.0 0.0 2.7258969146887266 2.6686542803746898E-5 18 0.0 0.0 0.0 2.8624786407583036 2.6686542803746898E-5 19 0.0 0.0 0.0 3.019422198987139 2.6686542803746898E-5 20 0.0 0.0 0.0 3.1995296763696266 2.6686542803746898E-5 21 0.0 0.0 0.0 3.3865756548810886 2.6686542803746898E-5 22 0.0 0.0 0.0 3.573675006478158 2.6686542803746898E-5 23 0.0 0.0 0.0 3.7415867337993336 2.6686542803746898E-5 24 8.005962841124069E-5 0.0 0.0 3.8902574637590077 2.6686542803746898E-5 25 8.005962841124069E-5 0.0 0.0 4.033510825529521 2.6686542803746898E-5 26 8.005962841124069E-5 0.0 0.0 4.180233437864522 2.6686542803746898E-5 27 8.005962841124069E-5 0.0 0.0 4.337363801892983 2.6686542803746898E-5 28 8.005962841124069E-5 0.0 0.0 4.498390401170792 2.6686542803746898E-5 29 8.005962841124069E-5 0.0 0.0 4.674681702932344 2.6686542803746898E-5 30 8.005962841124069E-5 0.0 0.0 4.8499322295245495 2.6686542803746898E-5 31 8.005962841124069E-5 0.0 0.0 5.030359945420683 2.6686542803746898E-5 32 8.005962841124069E-5 0.0 0.0 5.2358996980951416 2.6686542803746898E-5 33 8.005962841124069E-5 0.0 0.0 5.436609186522122 2.6686542803746898E-5 34 8.005962841124069E-5 0.0 0.0 5.668355124229859 2.6686542803746898E-5 35 8.005962841124069E-5 0.0 0.0 5.878805200780207 2.6686542803746898E-5 36 8.005962841124069E-5 0.0 0.0 6.105907680040094 2.6686542803746898E-5 37 8.005962841124069E-5 0.0 0.0 6.398979293110842 2.6686542803746898E-5 38 8.005962841124069E-5 0.0 0.0 6.709530591718045 2.6686542803746898E-5 39 8.005962841124069E-5 0.0 0.0 7.0660361170333 2.6686542803746898E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTTA 20 7.0353306E-4 45.0 41 CGTAATC 20 7.0353306E-4 45.0 33 CGTTTTT 31605 0.0 43.860943 1 TCTACGG 330 0.0 42.272728 1 CTTACTG 9295 0.0 40.812267 38 CACTTAC 9340 0.0 40.6879 36 CGCACTT 9335 0.0 40.66149 34 ACTTACT 9340 0.0 40.54336 37 CCGCACT 9440 0.0 40.209217 33 GCACTTA 9460 0.0 40.171776 35 ACTACGG 185 0.0 40.135136 1 GGGTACC 3390 0.0 39.955753 6 CCCGCAC 9560 0.0 39.93985 32 TATACGG 220 0.0 39.886364 1 ACCCGCA 9540 0.0 39.882072 31 ACGACCA 740 0.0 39.83108 27 CCAGTAG 3455 0.0 39.659912 25 GTTGATC 3560 0.0 39.56461 15 CATATGC 3330 0.0 39.527027 32 AACACGT 695 0.0 39.496403 40 >>END_MODULE