SRR1043454_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043454_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3437604
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102923	2.994033053254534	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	27814	0.8091100661972699	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11652	0.3389570177367725	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10725	0.31199056086739485	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8040	0.23388383304185126	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5860	0.17046756985388659	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5399	0.15705706649166107	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5321	0.15478804423080728	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4691	0.1364613259700652	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATA	20	7.0352474E-4	45.000004	16
ACAATCG	20	7.0352474E-4	45.000004	38
ACGGGTA	345	0.0	44.347828	4
CGTTTTT	30160	0.0	43.63478	1
ACGTAGG	320	0.0	42.89063	1
GCGATAT	165	0.0	42.272728	8
CGAAACG	75	0.0	42.0	13
CGCACTT	8670	0.0	40.97751	34
TCACGAC	710	0.0	40.880283	24
ACATACG	540	0.0	40.833332	16
CCGCACT	8760	0.0	40.556507	33
CACTTAC	8760	0.0	40.556507	36
CTTACTG	8665	0.0	40.53376	38
GCACTTA	8775	0.0	40.435898	35
ACTTACT	8720	0.0	40.40711	37
ACCCGCA	8785	0.0	40.287422	31
CACGACG	715	0.0	40.27972	25
ACGGGAT	770	0.0	40.032467	4
CCCGCAC	8905	0.0	40.02246	32
AATGCGG	480	0.0	39.843746	1