##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043454_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3437604 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.54319636584086 31.0 31.0 33.0 30.0 34.0 2 30.58413185462898 31.0 31.0 34.0 26.0 34.0 3 31.557233177527138 31.0 31.0 34.0 28.0 34.0 4 35.171279763463154 37.0 35.0 37.0 32.0 37.0 5 35.49791395402146 37.0 35.0 37.0 33.0 37.0 6 35.78763493409945 37.0 35.0 37.0 35.0 37.0 7 33.74144782237861 37.0 35.0 37.0 32.0 37.0 8 34.74246655519367 37.0 35.0 37.0 31.0 37.0 9 36.734074081831416 39.0 37.0 39.0 32.0 39.0 10 36.72492555861583 39.0 35.0 39.0 32.0 39.0 11 36.48434549180185 39.0 35.0 39.0 32.0 39.0 12 36.46030636454926 39.0 35.0 39.0 32.0 39.0 13 36.443017287622425 39.0 35.0 39.0 32.0 39.0 14 37.673255849132126 40.0 36.0 41.0 33.0 41.0 15 37.75147137366608 40.0 36.0 41.0 33.0 41.0 16 37.55238299699442 40.0 35.0 41.0 32.0 41.0 17 37.47185045165179 40.0 35.0 41.0 32.0 41.0 18 37.34068467455821 39.0 35.0 41.0 32.0 41.0 19 37.1786578675147 38.0 35.0 41.0 32.0 41.0 20 36.9727531152512 38.0 35.0 41.0 32.0 41.0 21 36.86886534923743 38.0 35.0 41.0 32.0 41.0 22 36.80523963784078 38.0 35.0 40.0 32.0 41.0 23 36.76594337218597 38.0 35.0 40.0 32.0 41.0 24 36.6278253690652 38.0 35.0 40.0 32.0 41.0 25 36.5253115251204 38.0 35.0 40.0 31.0 41.0 26 36.25617755855532 38.0 35.0 40.0 31.0 41.0 27 36.13409048860776 38.0 35.0 40.0 31.0 41.0 28 35.96565369367734 37.0 35.0 40.0 30.0 41.0 29 35.82219563393573 37.0 35.0 40.0 30.0 41.0 30 35.652555675406475 37.0 34.0 40.0 30.0 41.0 31 35.50959185525733 37.0 34.0 40.0 29.0 41.0 32 35.447865722753406 37.0 34.0 40.0 28.0 41.0 33 35.17495150692168 37.0 34.0 40.0 26.0 41.0 34 35.03209910158355 37.0 34.0 40.0 25.0 41.0 35 34.942659189365614 37.0 34.0 40.0 25.0 41.0 36 34.832929563731014 37.0 34.0 40.0 25.0 41.0 37 34.73554574639778 37.0 34.0 40.0 24.0 41.0 38 34.599697347338434 36.0 34.0 40.0 24.0 41.0 39 34.471127564431505 36.0 34.0 40.0 23.0 41.0 40 34.3752997727487 36.0 34.0 40.0 23.0 41.0 41 34.27778097768097 36.0 33.0 40.0 23.0 41.0 42 34.172197262977356 35.0 33.0 40.0 23.0 41.0 43 33.99055417668818 35.0 33.0 40.0 23.0 41.0 44 33.77855273614995 35.0 33.0 40.0 22.0 41.0 45 33.54863707396198 35.0 33.0 40.0 21.0 41.0 46 33.54248569643275 35.0 33.0 40.0 22.0 41.0 47 33.51278797674194 35.0 33.0 39.0 22.0 41.0 48 33.42012721651476 35.0 33.0 39.0 22.0 41.0 49 33.37340862996436 35.0 33.0 39.0 22.0 41.0 50 33.3167150724749 35.0 33.0 39.0 22.0 41.0 51 32.89148517397583 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 3.0 10 4.0 11 6.0 12 15.0 13 37.0 14 69.0 15 158.0 16 398.0 17 815.0 18 1710.0 19 3226.0 20 5598.0 21 9089.0 22 14185.0 23 21133.0 24 31897.0 25 46791.0 26 61555.0 27 73497.0 28 80790.0 29 87849.0 30 97916.0 31 113885.0 32 137826.0 33 182530.0 34 334830.0 35 344119.0 36 336246.0 37 377119.0 38 476581.0 39 597389.0 40 336.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.705137648199155 17.20797392602522 24.561380542959572 28.525507882816054 2 31.126069204015355 20.812170337246524 27.66839926879303 20.39336118994509 3 26.93239244543583 21.293813947156217 31.972152697052948 19.801640910355005 4 23.742816217342078 24.853880784406815 29.291215625767247 22.112087372483856 5 22.033747924426432 33.628189867128384 27.65850865893803 16.679553549507155 6 82.5904903531646 2.343114564679352 13.575531096659185 1.4908639854968753 7 78.16409336270263 7.493591466614537 12.729883954056373 1.6124312166264643 8 77.30023586195502 3.567310254467938 15.913351276063212 3.219102607513838 9 44.964603252730676 17.696279152572547 22.84442885218891 14.494688742507863 10 31.483818380476635 17.703958920224668 29.071731357073123 21.740491342225575 11 27.947139926530223 15.1164008419818 37.7056810499406 19.230778181547382 12 23.458257553807826 16.99526763408467 38.071429984372834 21.475044827734667 13 18.758181570652116 20.566388682349686 40.61424759803631 20.061182148961894 14 19.948720096904704 18.156657951293983 41.31552092678505 20.57910102501626 15 25.312456001331157 15.013393049344833 39.316715945175766 20.35743500414824 16 25.048987608811252 15.766097549339598 35.47883933111551 23.70607551073364 17 24.614091675480946 18.907704319636583 35.75030748160638 20.727896523276097 18 25.820600627646467 23.12471128146232 31.333568380767534 19.72111971012368 19 26.928639831696728 21.39885804182215 30.584878304772744 21.087623821708377 20 27.30654839824482 22.436150295380155 32.728667990844784 17.528633315530236 21 23.086312443201717 18.970916952621653 34.78134770613485 23.161422898041774 22 24.634483785799645 19.956545314701753 34.05965317703842 21.349317722460178 23 26.456915921671026 19.480196090067384 34.19719083408095 19.865697154180644 24 27.061144913724792 17.20006143814122 32.36326813676037 23.375525511373617 25 21.32328214651833 19.15258418363488 33.71778715640312 25.806346513443668 26 19.770223679050876 19.281569372155722 35.954199494764374 24.994007454029028 27 21.13908408298338 21.739967721703838 34.671794656976196 22.449153538336585 28 23.634804939719643 22.858101165812002 32.19760042168906 21.309493472779295 29 23.647546372415206 19.436008336038707 36.708969386817095 20.20747590472899 30 28.082786731688696 19.350425470763938 32.7589216209895 19.80786617655786 31 28.762940699394115 20.38207425869879 30.975441033929446 19.87954400797765 32 28.576473613598306 18.985025616679525 29.675669448837038 22.762831320885127 33 23.749216023718848 21.14769473156303 33.608757727766196 21.494331516951924 34 22.540321689176533 23.433298308938436 32.60256271519349 21.423817286691545 35 25.548550676575893 26.51977947430827 28.38587574368659 19.545794105429245 36 24.277723670323866 25.434081412518722 28.106902365717517 22.1812925514399 37 25.33383717263536 27.681867952213228 26.617871052046716 20.3664238231047 38 24.226787029570595 24.48909182093109 26.987168970015162 24.296952179483153 39 24.166687029686955 21.33715809034432 31.2580215754927 23.238133304476026 40 21.114822998809636 22.23438185433808 31.65527501131602 24.995520135536264 41 21.031014625302973 25.97384690034105 28.188354446876374 24.806784027479605 42 20.868197733072222 20.52371360982824 29.815999748662147 28.792088908437393 43 21.69176554367519 19.85699923551404 32.51892888186074 25.932306338950035 44 23.685770670501896 22.428208717467164 30.362863203556895 23.52315740847404 45 25.18643799576682 22.933909781347705 30.49240110262846 21.387251120257016 46 22.420412589699104 23.57956297467655 30.424737695208638 23.575286740415706 47 21.139927693823953 24.524465296177222 31.88491170012602 22.450695309872806 48 23.660258715081785 23.534298889575414 31.60553106175115 21.199911333591654 49 22.814815202681867 21.493284275908454 32.412575735890464 23.27932478551922 50 20.36802377469889 22.795499423435626 34.19765627454471 22.638820527320775 51 20.1185767761499 20.511728517886297 33.96255066028548 25.407144045678326 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1705.0 1 14778.5 2 27852.0 3 95621.5 4 163391.0 5 99917.5 6 36444.0 7 32274.5 8 28105.0 9 27360.0 10 26615.0 11 26345.0 12 26075.0 13 25037.0 14 23999.0 15 22403.5 16 20808.0 17 19543.5 18 18279.0 19 17981.0 20 17683.0 21 16624.0 22 15565.0 23 15185.0 24 14805.0 25 15630.0 26 18866.0 27 21277.0 28 22757.0 29 24237.0 30 28833.0 31 33429.0 32 37281.5 33 41134.0 34 47105.5 35 53077.0 36 57123.0 37 61169.0 38 63187.5 39 65206.0 40 74991.5 41 84777.0 42 98715.5 43 112654.0 44 124158.0 45 135662.0 46 146819.0 47 157976.0 48 183703.0 49 209430.0 50 209167.0 51 208904.0 52 191816.5 53 174729.0 54 178809.0 55 182889.0 56 192518.0 57 202147.0 58 212716.0 59 223285.0 60 225530.5 61 227776.0 62 221445.0 63 215114.0 64 195891.5 65 176669.0 66 149211.0 67 121753.0 68 100540.0 69 79327.0 70 69517.5 71 59708.0 72 55707.0 73 51706.0 74 44250.0 75 28304.5 76 19815.0 77 14626.5 78 9438.0 79 7455.5 80 5473.0 81 3927.5 82 2382.0 83 1705.0 84 1028.0 85 725.5 86 423.0 87 299.5 88 176.0 89 181.0 90 186.0 91 119.5 92 53.0 93 33.0 94 13.0 95 8.0 96 3.0 97 3.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3437604.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.125898285874158 #Duplication Level Percentage of deduplicated Percentage of total 1 77.62479811431739 18.727679837675375 2 9.457657871065125 4.563489836398287 3 3.0086305937046687 2.177577470504641 4 1.459795423635156 1.408755036352254 5 0.8513110305781373 1.0269321666685423 6 0.577235369561276 0.8355793087826593 7 0.43299727677025435 0.7312513780193761 8 0.3603049136452787 0.6954143758805333 9 0.28148638536800696 0.6112000712022221 >10 4.1737063799532 25.333557083808223 >50 1.4093454194424853 23.629079139983187 >100 0.3519630996212973 12.44204011021622 >500 0.007524711995041094 1.2573240212193502 >1k 0.002205519033029286 0.997032595766024 >5k 5.189456548304202E-4 0.7706078516908241 >10k+ 5.189456548304202E-4 4.792479715832203 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 102923 2.994033053254534 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 27814 0.8091100661972699 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11652 0.3389570177367725 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 10725 0.31199056086739485 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8040 0.23388383304185126 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5860 0.17046756985388659 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5399 0.15705706649166107 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 5321 0.15478804423080728 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4691 0.1364613259700652 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.040667860521456226 0.0 2 2.909002898530488E-5 0.0 0.0 0.13067241020198953 0.0 3 2.909002898530488E-5 0.0 0.0 0.19929578857832375 0.0 4 2.909002898530488E-5 0.0 0.0 0.24877792788232733 0.0 5 2.909002898530488E-5 0.0 0.0 0.5339183919962858 0.0 6 2.909002898530488E-5 0.0 0.0 0.624592012343481 0.0 7 2.909002898530488E-5 0.0 0.0 0.9042926410371875 0.0 8 2.909002898530488E-5 0.0 0.0 1.2118906075278013 0.0 9 2.909002898530488E-5 0.0 0.0 1.4996782642794226 0.0 10 2.909002898530488E-5 0.0 0.0 1.6878325717563745 0.0 11 2.909002898530488E-5 0.0 0.0 1.8843066275231237 0.0 12 2.909002898530488E-5 0.0 0.0 2.0505852332031265 0.0 13 2.909002898530488E-5 0.0 0.0 2.138117130419909 0.0 14 2.909002898530488E-5 0.0 0.0 2.1995261816078875 0.0 15 2.909002898530488E-5 0.0 0.0 2.3828224542442933 0.0 16 2.909002898530488E-5 0.0 0.0 2.590496171170385 0.0 17 2.909002898530488E-5 0.0 0.0 2.8614697911685 0.0 18 2.909002898530488E-5 0.0 0.0 3.0204758896021766 0.0 19 2.909002898530488E-5 0.0 0.0 3.2113937498327325 0.0 20 2.909002898530488E-5 0.0 0.0 3.4215982992805456 0.0 21 2.909002898530488E-5 0.0 0.0 3.6311046880327114 0.0 22 2.909002898530488E-5 0.0 0.0 3.842356478523995 0.0 23 2.909002898530488E-5 0.0 0.0 4.0353688208414935 0.0 24 8.727008695591465E-5 0.0 0.0 4.2063891012461 0.0 25 8.727008695591465E-5 0.0 0.0 4.376565770810134 0.0 26 8.727008695591465E-5 0.0 0.0 4.560327483910305 0.0 27 8.727008695591465E-5 0.0 0.0 4.758692391561099 0.0 28 8.727008695591465E-5 0.0 0.0 4.965202507327779 0.0 29 8.727008695591465E-5 0.0 0.0 5.16618551758725 0.0 30 8.727008695591465E-5 0.0 0.0 5.373684694339429 0.0 31 8.727008695591465E-5 0.0 0.0 5.584529224424919 0.0 32 8.727008695591465E-5 0.0 0.0 5.838077917060836 0.0 33 8.727008695591465E-5 0.0 0.0 6.07597617410266 0.0 34 8.727008695591465E-5 0.0 0.0 6.350178787318144 0.0 35 8.727008695591465E-5 0.0 0.0 6.59116058743241 0.0 36 8.727008695591465E-5 0.0 0.0 6.865275930560937 0.0 37 8.727008695591465E-5 0.0 0.0 7.197454971544134 0.0 38 1.1636011594121952E-4 0.0 0.0 7.584701437396512 0.0 39 1.1636011594121952E-4 0.0 0.0 8.020906422031159 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATA 20 7.0352474E-4 45.000004 16 ACAATCG 20 7.0352474E-4 45.000004 38 ACGGGTA 345 0.0 44.347828 4 CGTTTTT 30160 0.0 43.63478 1 ACGTAGG 320 0.0 42.89063 1 GCGATAT 165 0.0 42.272728 8 CGAAACG 75 0.0 42.0 13 CGCACTT 8670 0.0 40.97751 34 TCACGAC 710 0.0 40.880283 24 ACATACG 540 0.0 40.833332 16 CCGCACT 8760 0.0 40.556507 33 CACTTAC 8760 0.0 40.556507 36 CTTACTG 8665 0.0 40.53376 38 GCACTTA 8775 0.0 40.435898 35 ACTTACT 8720 0.0 40.40711 37 ACCCGCA 8785 0.0 40.287422 31 CACGACG 715 0.0 40.27972 25 ACGGGAT 770 0.0 40.032467 4 CCCGCAC 8905 0.0 40.02246 32 AATGCGG 480 0.0 39.843746 1 >>END_MODULE