SRR1043453_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043453_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2103471
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68061	3.235651929596367	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17890	0.8504990085434979	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7929	0.3769483867379203	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7096	0.33734717521658253	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5000	0.2377023500680542	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4480	0.21298130566097653	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3033	0.14419024555128165	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2904	0.13805752491952586	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2108	0.10021531078869164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	25	3.8919134E-5	45.000004	43
AATATCG	30	2.1663654E-6	45.000004	24
TAACACG	25	3.8919134E-5	45.000004	13
CGTAAAT	20	7.034623E-4	45.000004	35
ATCGGTA	25	3.8919134E-5	45.000004	26
GCGTAAT	20	7.034623E-4	45.000004	25
ATCGATA	20	7.034623E-4	45.000004	34
ATCGAAT	25	3.8919134E-5	45.000004	13
ACGTAGG	200	0.0	43.875004	1
CGTTTTT	17950	0.0	43.157383	1
ACTACGG	150	0.0	42.000004	1
TAATCGT	150	0.0	42.000004	20
TAGTAGG	435	0.0	41.89655	1
TAACGGG	600	0.0	41.625004	2
CGGTCTA	565	0.0	41.41593	30
CACGACG	560	0.0	41.38393	25
ACGATAC	60	3.6379788E-12	41.250004	44
ACGGGTA	205	0.0	40.60976	4
ACGGGAT	475	0.0	40.263157	4
TCACGAC	590	0.0	40.042374	24