SRR1043452_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043452_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1851856
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99172	5.355276004181751	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10810	0.5837386924253289	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4353	0.23506147346229944	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	2667	0.14401767740040264	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2521	0.13613369506052306	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCC	2009	0.10848575699190434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	30	2.1662236E-6	45.000004	33
CAACGAT	25	3.8917333E-5	45.0	34
CCCATCG	25	3.8917333E-5	45.0	28
CGTTTTT	27100	0.0	44.46863	1
CGGTCTA	155	0.0	43.54839	30
CGTTTTA	1440	0.0	43.125004	1
CTCGCGC	105	0.0	42.857143	32
TACGCGG	290	0.0	41.89655	1
CTAGCGG	355	0.0	41.830982	1
AGTACGG	140	0.0	41.785713	1
GCGATTG	260	0.0	41.538464	8
GCGATCG	65	0.0	41.538464	8
ACTGCGG	245	0.0	41.32653	1
AATACGG	55	6.184564E-11	40.909092	1
ACGGTCT	160	0.0	40.78125	29
CTTACGG	105	0.0	40.714287	1
CGACGGT	155	0.0	40.645164	27
ACGCGAG	45	1.929402E-8	40.000004	2
CGGGATC	980	0.0	39.94898	5
GTAGCGG	335	0.0	39.626865	1