FastQCFastQC Report
Thu 26 May 2016
SRR1043451_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043451_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1193771
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT755586.3293546249657595No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79500.6659568711251991No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32000.26805811164787885No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15050.12607108063439304No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGATGT302.1655724E-645.0000045
CGTAGGC351.2119744E-745.0000042
GACGGAC302.1655724E-645.00000434
CGTAAAT351.2119744E-745.00000415
CGGTCTA1400.045.00000430
ACATCGC351.2119744E-745.00000417
CTATGCG207.033396E-445.023
TCCGCAT207.033396E-445.011
CGAGTAC207.033396E-445.05
TTAGCGA406.8157533E-945.01
GGCAACG453.8562575E-1045.07
GTGATCG207.033396E-445.019
CTAAGCG253.8908962E-545.017
TATGCGC207.033396E-445.024
CGGATCG207.033396E-445.05
AGCGATA207.033396E-445.07
CTCGCGA207.033396E-445.01
CGTCCAA207.033396E-445.09
CGTCATG207.033396E-445.017
GGTTACG207.033396E-445.026