SRR1043451_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043451_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1193771
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75558	6.3293546249657595	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7950	0.6659568711251991	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3200	0.26805811164787885	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1505	0.12607108063439304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGATGT	30	2.1655724E-6	45.000004	5
CGTAGGC	35	1.2119744E-7	45.000004	2
GACGGAC	30	2.1655724E-6	45.000004	34
CGTAAAT	35	1.2119744E-7	45.000004	15
CGGTCTA	140	0.0	45.000004	30
ACATCGC	35	1.2119744E-7	45.000004	17
CTATGCG	20	7.033396E-4	45.0	23
TCCGCAT	20	7.033396E-4	45.0	11
CGAGTAC	20	7.033396E-4	45.0	5
TTAGCGA	40	6.8157533E-9	45.0	1
GGCAACG	45	3.8562575E-10	45.0	7
GTGATCG	20	7.033396E-4	45.0	19
CTAAGCG	25	3.8908962E-5	45.0	17
TATGCGC	20	7.033396E-4	45.0	24
CGGATCG	20	7.033396E-4	45.0	5
AGCGATA	20	7.033396E-4	45.0	7
CTCGCGA	20	7.033396E-4	45.0	1
CGTCCAA	20	7.033396E-4	45.0	9
CGTCATG	20	7.033396E-4	45.0	17
GGTTACG	20	7.033396E-4	45.0	26