SRR1043450_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043450_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	726357
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58199	8.012451177588982	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6354	0.8747764529012593	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2493	0.3432196564499275	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1099	0.15130300940171293	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1016	0.13987612152151077	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	956	0.1316157206442562	Illumina Single End Adapter 2 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	854	0.11757303915292341	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAT	30	2.1643937E-6	45.000004	15
CTTGCGG	150	0.0	45.000004	1
GCGATAG	120	0.0	45.000004	8
CATAATG	30	2.1643937E-6	45.000004	43
CATCGAA	30	2.1643937E-6	45.000004	13
CGATGTA	30	2.1643937E-6	45.000004	9
ATAACGG	30	2.1643937E-6	45.000004	1
AATAGGC	30	2.1643937E-6	45.000004	40
AGTAGAG	30	2.1643937E-6	45.000004	2
GGTTCCG	30	2.1643937E-6	45.000004	29
AGCACGT	30	2.1643937E-6	45.000004	17
CGGACAT	20	7.03157E-4	45.0	6
CGGGTAC	20	7.03157E-4	45.0	5
CCGGGTA	25	3.8893828E-5	45.0	4
GGTACGA	20	7.03157E-4	45.0	7
GTACCGG	35	1.2111013E-7	45.0	1
GCGACAT	25	3.8893828E-5	45.0	36
AGTTTCG	20	7.03157E-4	45.0	12
GTCGAGT	20	7.03157E-4	45.0	10
GGTCGAG	20	7.03157E-4	45.0	9