SRR1043449_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043449_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	606906
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32958	5.430495002520983	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3425	0.5643378051955328	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1332	0.21947385591837948	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1268	0.20892856554392278	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	697	0.11484480298431718	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	615	0.10133364969204456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACAGTA	55	1.8189894E-12	45.000004	8
ACACAGG	55	1.8189894E-12	45.000004	1
ACGGGTC	55	1.8189894E-12	45.000004	4
CTTATGG	55	1.8189894E-12	45.000004	1
TGATTTG	35	1.2106648E-7	45.000004	28
GTCGTGG	35	1.2106648E-7	45.000004	1
TTGCGTG	35	1.2106648E-7	45.000004	13
ATGACGG	35	1.2106648E-7	45.000004	1
GCGATAG	55	1.8189894E-12	45.000004	8
AGGGCGT	35	1.2106648E-7	45.000004	5
AGTACGG	55	1.8189894E-12	45.000004	1
TCACGCA	20	7.030653E-4	45.0	24
CAGGTTG	20	7.030653E-4	45.0	5
GTCATCA	20	7.030653E-4	45.0	20
GTGCAGA	25	3.8886228E-5	45.0	1
GGTACTC	20	7.030653E-4	45.0	11
TACCCTC	20	7.030653E-4	45.0	31
ACAAATG	20	7.030653E-4	45.0	26
GTCGCAT	25	3.8886228E-5	45.0	9
CGTATTT	20	7.030653E-4	45.0	1