SRR1043448_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043448_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3441304
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	144344	4.194456519970337	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	32485	0.9439735635096462	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14559	0.4230663725146049	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13461	0.3911598626567138	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8843	0.2569665452398277	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6537	0.18995706278782695	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	6336	0.18411625360619113	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5459	0.1586317279728847	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	5332	0.1549412664501596	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5095	0.14805434219121588	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	42235	43.859947	1
CGCACTT	10010	41.583416	34
GCACTTA	10090	41.253716	35
CACTTAC	10085	41.251858	36
ACTTACT	10025	41.20698	37
CGTTTTA	2235	40.872482	1
CTTACTG	10085	40.850273	38
CCGCACT	10215	40.770927	33
ACCCGCA	10205	40.700638	31
CCCGCAC	10290	40.626823	32
ACGGGTA	495	40.0	4
CACGACG	835	39.88024	25
CTTATGA	10680	39.712082	25
TGACCCG	10450	39.638756	29
AACGCAA	10865	39.636444	17
TCAACGC	10915	39.55795	15
TTATGAC	10710	39.537815	26
ATCAACG	10940	39.46755	14
CTTAATC	11045	39.438663	10
CAACGCA	10920	39.436813	16