SRR1043447_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043447_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3148973
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	101679	3.2289575045578354	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	23625	0.7502446035580489	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10849	0.3445250245079904	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10050	0.3191516726246938	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8741	0.27758256422014416	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4951	0.15722586379749842	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4843	0.15379617418123306	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4792	0.15217659852910775	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4294	0.13636191863188413	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	29050	43.8537	1
GCGATCG	90	42.5	8
ATAACGG	120	41.249996	1
CATGCGG	470	41.17021	1
TAGTAGG	715	40.594406	1
CGCACTT	8220	40.593067	34
CACTTAC	8220	40.593067	36
CTTACTG	8170	40.483475	38
CCGCACT	8215	40.42605	33
GCACTTA	8260	40.31477	35
TTCACGG	240	40.312496	1
ACCCGCA	8260	40.20581	31
ACTTACT	8290	40.087456	37
CATATGC	2070	40.0	32
TAGCATA	2075	39.903614	29
CCCGCAC	8375	39.841793	32
GTAGCAT	2160	39.791664	28
GTTGATC	2230	39.349773	15
ATAGGGC	745	39.261745	3
GCCAGTA	2220	39.222973	24