SRR1043446_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043446_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	556691
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47029	8.447954071468732	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4775	0.8577469368105465	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1920	0.34489510338769624	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	864	0.1552027965244633	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	597	0.1072408212096118	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTATG	25	3.8882034E-5	45.000004	16
AGGCGTG	25	3.8882034E-5	45.000004	2
ATACTCC	30	2.163477E-6	45.000004	37
CGGATCA	25	3.8882034E-5	45.000004	29
AATCTGC	25	3.8882034E-5	45.000004	44
CTCATGG	25	3.8882034E-5	45.000004	1
GCCAGCG	30	2.163477E-6	45.000004	39
GGCGCAG	25	3.8882034E-5	45.000004	7
GTCCACT	30	2.163477E-6	45.000004	27
CATCCGG	30	2.163477E-6	45.000004	1
CGTCCCC	30	2.163477E-6	45.000004	38
CTGTGTT	30	2.163477E-6	45.000004	11
AATGTAG	30	2.163477E-6	45.000004	15
TCGCCGT	20	7.030149E-4	45.0	24
TGTCAGT	20	7.030149E-4	45.0	20
CTGTCGG	35	1.2104101E-7	45.0	1
ACCGGAC	20	7.030149E-4	45.0	33
ACTGCGG	55	1.8189894E-12	45.0	1
CGTATTT	20	7.030149E-4	45.0	1
GATAATC	20	7.030149E-4	45.0	8