SRR1043444_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043444_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3636948
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	135442	3.724056544113361	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	30633	0.8422721468659987	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14660	0.40308522420447035	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11946	0.3284622161218692	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9800	0.2694566983085818	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6116	0.1681629762097231	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6054	0.16645825015919943	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5332	0.14660644034503656	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5077	0.13959506707272143	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	20	7.035304E-4	45.0	19
CGTTTTT	37840	0.0	43.69186	1
CGGTCTA	1145	0.0	41.659386	30
TCACGAC	1150	0.0	41.47826	24
CACGACG	1135	0.0	41.03524	25
CACTTAC	10195	0.0	40.71849	36
CGACGGT	1155	0.0	40.714287	27
ACTTACT	10185	0.0	40.537556	37
CGCACTT	10295	0.0	40.301113	34
GACGGTC	1185	0.0	40.253166	28
TAGTAGG	795	0.0	39.905663	1
GCACTTA	10420	0.0	39.860844	35
CTTACTG	10375	0.0	39.86024	38
CGTTTTA	1980	0.0	39.659092	1
ACCCGCA	10455	0.0	39.598278	31
CATGCGG	535	0.0	39.53271	1
CCCGCAC	10590	0.0	39.43343	32
CCGCACT	10535	0.0	39.340294	33
GGGCGAT	3615	0.0	39.336098	6
ACGTAGG	350	0.0	39.214287	1