SRR1043443_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043443_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	868561
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48208	5.5503297983676445	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4997	0.5753194076178876	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2001	0.2303810555620158	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1160	0.13355423510841494	No Hit
GAAAGGGGCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCT	1035	0.11916261494587024	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	896	0.10315913332512051	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	30	2.1648866E-6	45.000004	40
CCAATCG	45	3.8380676E-10	45.000004	23
ATTCGGT	30	2.1648866E-6	45.000004	43
AACGGGT	45	3.8380676E-10	45.000004	3
CCCCGAT	30	2.1648866E-6	45.000004	39
GGACGTT	30	2.1648866E-6	45.000004	8
ACCACGG	60	0.0	45.000004	1
TGGGCGC	45	3.8380676E-10	45.000004	5
AGTAGCG	45	3.8380676E-10	45.000004	32
ATACCGT	30	2.1648866E-6	45.000004	10
CTTACGG	45	3.8380676E-10	45.000004	1
CATATTG	25	3.8900158E-5	45.0	14
CGTTGCA	20	7.0323347E-4	45.0	39
TCGGGTA	20	7.0323347E-4	45.0	4
ATTGTCG	20	7.0323347E-4	45.0	41
GCGTTGC	20	7.0323347E-4	45.0	38
GCCATAC	20	7.0323347E-4	45.0	12
ATCGTTC	20	7.0323347E-4	45.0	36
ACCTCGG	20	7.0323347E-4	45.0	1
GCACCGC	20	7.0323347E-4	45.0	26