##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043443_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 868561 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.54279549738015 31.0 31.0 33.0 30.0 34.0 2 30.580741018765522 31.0 31.0 34.0 26.0 34.0 3 31.497491828438072 31.0 31.0 34.0 28.0 34.0 4 35.12012627783196 37.0 35.0 37.0 32.0 37.0 5 35.433141713708075 37.0 35.0 37.0 33.0 37.0 6 35.810121568893834 37.0 35.0 37.0 35.0 37.0 7 33.764957210834936 37.0 35.0 37.0 32.0 37.0 8 34.79935318302341 37.0 35.0 37.0 32.0 37.0 9 36.76567218652461 39.0 37.0 39.0 32.0 39.0 10 36.73025153098055 39.0 35.0 39.0 32.0 39.0 11 36.387588206239975 38.0 35.0 39.0 32.0 39.0 12 36.220924034120806 39.0 35.0 39.0 32.0 39.0 13 36.28404452882411 39.0 35.0 39.0 32.0 39.0 14 37.650169648418476 40.0 35.0 41.0 33.0 41.0 15 37.830341219557404 40.0 35.0 41.0 33.0 41.0 16 37.79207793119885 40.0 35.0 41.0 33.0 41.0 17 37.79550313679753 40.0 36.0 41.0 33.0 41.0 18 37.51319481302983 39.0 36.0 41.0 33.0 41.0 19 37.23943165764984 38.0 35.0 41.0 33.0 41.0 20 36.939076242198304 38.0 35.0 41.0 33.0 41.0 21 36.85046300720387 38.0 35.0 41.0 32.0 41.0 22 36.77026253769165 38.0 35.0 40.0 32.0 41.0 23 36.686453801172284 38.0 35.0 40.0 32.0 41.0 24 36.544464925319005 37.0 35.0 40.0 32.0 41.0 25 36.44872150603124 37.0 35.0 40.0 32.0 41.0 26 36.19233306584108 37.0 35.0 40.0 31.0 41.0 27 36.11655830736126 36.0 35.0 40.0 31.0 41.0 28 36.05244997184999 36.0 35.0 40.0 31.0 41.0 29 35.99468661383599 36.0 35.0 40.0 31.0 41.0 30 35.8296147305716 36.0 35.0 40.0 31.0 41.0 31 35.410457066343064 36.0 35.0 40.0 30.0 41.0 32 35.268693851093936 36.0 35.0 40.0 29.0 41.0 33 35.15617671067432 36.0 35.0 40.0 27.0 41.0 34 34.97577372228318 36.0 35.0 40.0 26.0 41.0 35 34.76255553726221 36.0 34.0 40.0 25.0 41.0 36 34.60208321580177 36.0 34.0 40.0 24.0 41.0 37 34.54209088365699 36.0 34.0 40.0 24.0 41.0 38 34.45979269158988 36.0 34.0 40.0 23.0 41.0 39 34.31789477077603 35.0 34.0 40.0 23.0 41.0 40 34.285041580268974 35.0 34.0 40.0 23.0 41.0 41 34.18924750247824 35.0 34.0 40.0 23.0 41.0 42 34.098812864036034 35.0 34.0 40.0 22.0 41.0 43 33.93903479433224 35.0 34.0 40.0 21.0 41.0 44 33.743512545463126 35.0 33.0 40.0 21.0 41.0 45 33.57927077084972 35.0 33.0 40.0 20.0 41.0 46 33.58724603107899 35.0 33.0 40.0 20.0 41.0 47 33.59176039449158 35.0 33.0 40.0 20.0 41.0 48 33.526507637344984 35.0 33.0 40.0 20.0 41.0 49 33.428073560751635 35.0 33.0 40.0 20.0 41.0 50 33.31855102865544 35.0 33.0 40.0 20.0 41.0 51 32.88461259485517 35.0 33.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 4.0 13 11.0 14 30.0 15 42.0 16 90.0 17 188.0 18 414.0 19 848.0 20 1419.0 21 2339.0 22 3741.0 23 5673.0 24 9388.0 25 13942.0 26 17194.0 27 18445.0 28 18602.0 29 19358.0 30 22038.0 31 26045.0 32 32843.0 33 43948.0 34 78870.0 35 116639.0 36 92267.0 37 77897.0 38 98592.0 39 167602.0 40 86.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.826785913712452 18.906559239938243 24.954378564084735 29.31227628226457 2 30.81004097582093 21.59099936561738 29.266223097744433 18.33273656081726 3 21.435685000823202 21.797202499306323 37.271878428803504 19.49523407106697 4 22.85446848292751 25.347327361002854 33.880176521856264 17.91802763421337 5 19.332090664904364 32.2802888916265 32.045532783535066 16.342087659934073 6 79.55607032781809 2.402940035299766 16.894956140098394 1.1460334967837609 7 76.28640935984922 7.211468164009206 15.177748022303557 1.3243744538380149 8 76.5060830500103 3.570042864001492 17.585408509016638 2.338465576971566 9 39.843833651292194 25.85068866780802 24.16779017248069 10.137687508419098 10 31.286691435604407 23.42518257209338 34.03952054029596 11.248605452006249 11 29.78432142359604 21.8217258200633 35.52036068854116 12.873592067799496 12 17.88820819723658 34.637060609444816 33.381190267580514 14.093540925738088 13 12.97398801005341 36.11041711520549 34.15557456528672 16.760020309454372 14 10.79210326045033 25.796000511190346 47.6656216431546 15.746274585204723 15 13.477234183897274 22.447933996575944 45.51263526683791 18.562196552688874 16 14.088935607286073 23.967343686856765 35.00836440963847 26.93535629621869 17 16.403914060152367 24.05829872628405 41.573476128907465 17.964311084656114 18 20.254881349726734 25.873600127106787 34.6956632867467 19.17585523641978 19 22.21386868625232 25.62157407482031 34.9854529503397 17.179104288587677 20 16.061163234361203 29.95805706219828 36.16314801148106 17.81763169195946 21 18.46122494562846 25.501260130261432 33.2792975968297 22.758217327280413 22 12.987458566525554 29.47231109847207 34.088106649964715 23.452123685037666 23 12.878197386251514 24.761530853906635 46.758489041069076 15.601782718772775 24 13.358071568951404 27.664493340133856 41.47434664922786 17.50308844168688 25 13.554143002045912 32.89843776084812 34.76681545683032 18.78060378027565 26 12.436086814858138 34.13922568478207 35.49318930967428 17.931498190685513 27 12.268338090243518 30.056495744110084 40.722873810820424 16.95229235482597 28 12.452550828324089 25.073886577914507 40.279151377968844 22.19441121579256 29 13.893554971959368 31.52593772918655 37.553148253260275 17.027359045593805 30 19.91662070942628 30.555136599501935 33.30739003938699 16.220852651684798 31 19.636271948659907 27.59875241923135 34.59331008415068 18.17166554795806 32 18.91266128688716 31.24317117623287 32.34982920025191 17.494338336628054 33 14.880935248071234 29.36546771038534 33.661308762424284 22.092288279119142 34 15.227255195662712 28.501970500632655 35.415244294873936 20.855530008830698 35 22.23321102375078 28.93245264293469 31.885958499172766 16.94837783414176 36 15.492521538498735 33.07424579275376 34.164554936268146 17.268677732479354 37 15.882822277306948 31.639689094951308 33.472720971814304 19.00476765592745 38 15.535351000102468 33.77379366561474 32.26796966476736 18.42288566951544 39 18.677674912873133 29.25943025302771 32.044266320960766 20.0186285131384 40 14.740818434168702 28.0332642151789 35.16978082138157 22.056136529270827 41 16.259076794836517 29.41083009713768 31.777157850743933 22.552935257281874 42 16.56843906185058 27.654016240655523 33.522803809979955 22.254740887513947 43 15.697227943690773 29.22730815682491 33.715996919041956 21.359466980442363 44 13.607334430166679 37.814845474295986 29.07855637082485 19.499263724712485 45 17.846069533400648 32.40831674459249 31.451331570263918 18.29428215174294 46 15.988859734664576 32.76200520170719 31.240983649968168 20.008151413660066 47 15.902049481844108 29.699007899272473 33.62423594888557 20.774706669997848 48 17.520243252920636 27.56398226491864 35.51702183266345 19.398752649497272 49 17.54787516363272 31.75067726964485 31.784065828421955 18.917381738300477 50 14.868616021212096 31.499111749203568 31.347942171016197 22.284330058568138 51 14.921922582294162 28.41631157742519 35.61949016822077 21.04227567205988 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 882.0 1 4841.0 2 8800.0 3 33755.5 4 58711.0 5 34211.5 6 9712.0 7 9716.0 8 9720.0 9 11563.5 10 13407.0 11 14896.0 12 16385.0 13 16504.5 14 16624.0 15 14993.0 16 13362.0 17 11477.5 18 9593.0 19 8448.5 20 7304.0 21 7063.0 22 6822.0 23 6214.5 24 5607.0 25 6402.5 26 7689.0 27 8180.0 28 9481.0 29 10782.0 30 12314.5 31 13847.0 32 16572.5 33 19298.0 34 23324.0 35 27350.0 36 29334.5 37 31319.0 38 33028.5 39 34738.0 40 41176.0 41 47614.0 42 54812.5 43 62011.0 44 65839.5 45 69668.0 46 67133.0 47 64598.0 48 60757.0 49 56916.0 50 55959.0 51 55002.0 52 52051.5 53 49101.0 54 42175.5 55 35250.0 56 31273.5 57 27297.0 58 24625.5 59 21954.0 60 18229.0 61 14504.0 62 12117.5 63 9731.0 64 7974.5 65 6218.0 66 5342.5 67 4467.0 68 4040.0 69 3613.0 70 3277.5 71 2942.0 72 2974.0 73 3006.0 74 2641.5 75 1829.0 76 1381.0 77 1013.0 78 645.0 79 499.5 80 354.0 81 288.0 82 222.0 83 154.5 84 87.0 85 65.5 86 44.0 87 26.5 88 9.0 89 5.0 90 1.0 91 2.0 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 868561.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.22122055835218 #Duplication Level Percentage of deduplicated Percentage of total 1 78.41430309250335 24.481902517805246 2 9.516387069492122 5.942264392305285 3 3.4216760472611782 3.2048670765231573 4 1.7413619065030952 2.1746977661938316 5 1.1502611454815892 1.7956278461391761 6 0.7646717761115888 1.432439170603609 7 0.5333901428116709 1.16571639046619 8 0.3889475402230898 0.9714733551146915 9 0.3182844757850579 0.8943506836906318 >10 2.6459805786351915 18.35820301684242 >50 0.7960542882168027 17.864437224354617 >100 0.3021631879956854 13.895732863443122 >500 0.004601469867954601 0.9462636238156134 >1k 0.0015338232893182002 1.100582172790604 >5k 0.0 0.0 >10k+ 3.8345582232955004E-4 5.771441899911828 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48208 5.5503297983676445 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4997 0.5753194076178876 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2001 0.2303810555620158 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 1160 0.13355423510841494 No Hit GAAAGGGGCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCT 1035 0.11916261494587024 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 896 0.10315913332512051 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06631658570900605 0.0 2 0.0 0.0 0.0 0.2369436343561362 0.0 3 0.0 0.0 0.0 0.390070472885612 0.0 4 0.0 0.0 0.0 0.4913874788299267 0.0 5 0.0 0.0 0.0 1.1334840040020218 0.0 6 0.0 0.0 0.0 1.307680174449463 0.0 7 0.0 0.0 0.0 1.8082782901834182 0.0 8 0.0 0.0 0.0 2.3677093491418564 0.0 9 0.0 0.0 0.0 2.8061356657736187 0.0 10 0.0 0.0 0.0 3.1220605115818003 0.0 11 0.0 0.0 0.0 3.476670032386902 0.0 12 0.0 0.0 0.0 3.777051928419535 0.0 13 0.0 0.0 0.0 3.9017409255078226 0.0 14 0.0 0.0 0.0 4.004784925871643 0.0 15 0.0 0.0 0.0 4.382421038936816 0.0 16 0.0 0.0 0.0 4.835123842769823 0.0 17 0.0 0.0 0.0 5.391676577695752 0.0 18 0.0 0.0 0.0 5.662469302674193 0.0 19 0.0 0.0 0.0 5.971025638959152 0.0 20 0.0 0.0 0.0 6.314006730672918 0.0 21 0.0 0.0 0.0 6.664931996716408 0.0 22 2.3026592260071545E-4 0.0 0.0 7.062140713202642 0.0 23 2.3026592260071545E-4 0.0 0.0 7.358147556705862 0.0 24 4.605318452014309E-4 0.0 0.0 7.617426985554268 0.0 25 4.605318452014309E-4 0.0 0.0 7.873597824447563 0.0 26 4.605318452014309E-4 0.0 0.0 8.144160283503403 0.0 27 4.605318452014309E-4 0.0 0.0 8.395840936905985 0.0 28 8.05930729102504E-4 0.0 0.0 8.674692969175453 0.0 29 8.05930729102504E-4 0.0 0.0 9.031374883283961 0.0 30 8.05930729102504E-4 0.0 0.0 9.351214249776355 0.0 31 8.05930729102504E-4 0.0 0.0 9.61981944849009 0.0 32 8.05930729102504E-4 0.0 0.0 9.907421585818382 0.0 33 8.05930729102504E-4 0.0 0.0 10.21229366734173 0.0 34 8.05930729102504E-4 0.0 0.0 10.57335063397965 0.0 35 8.05930729102504E-4 0.0 0.0 10.877762183657797 0.0 36 8.05930729102504E-4 0.0 0.0 11.168818309825102 0.0 37 8.05930729102504E-4 0.0 0.0 11.507539481970754 0.0 38 8.05930729102504E-4 0.0 0.0 11.844073127851699 0.0 39 8.05930729102504E-4 0.0 0.0 12.20743275371563 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTC 30 2.1648866E-6 45.000004 40 CCAATCG 45 3.8380676E-10 45.000004 23 ATTCGGT 30 2.1648866E-6 45.000004 43 AACGGGT 45 3.8380676E-10 45.000004 3 CCCCGAT 30 2.1648866E-6 45.000004 39 GGACGTT 30 2.1648866E-6 45.000004 8 ACCACGG 60 0.0 45.000004 1 TGGGCGC 45 3.8380676E-10 45.000004 5 AGTAGCG 45 3.8380676E-10 45.000004 32 ATACCGT 30 2.1648866E-6 45.000004 10 CTTACGG 45 3.8380676E-10 45.000004 1 CATATTG 25 3.8900158E-5 45.0 14 CGTTGCA 20 7.0323347E-4 45.0 39 TCGGGTA 20 7.0323347E-4 45.0 4 ATTGTCG 20 7.0323347E-4 45.0 41 GCGTTGC 20 7.0323347E-4 45.0 38 GCCATAC 20 7.0323347E-4 45.0 12 ATCGTTC 20 7.0323347E-4 45.0 36 ACCTCGG 20 7.0323347E-4 45.0 1 GCACCGC 20 7.0323347E-4 45.0 26 >>END_MODULE