SRR1043442_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043442_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1052080
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57605	5.4753440802980755	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6262	0.5952018857881529	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2500	0.23762451524598888	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1172	0.11139837274731959	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	1119	0.10636073302410463	Illumina PCR Primer Index 7 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAT	30	2.165325E-6	45.000004	41
CGTCTTA	120	0.0	45.000004	37
CCGCTAA	30	2.165325E-6	45.000004	15
GACTTCG	120	0.0	45.000004	32
ACGTCGA	30	2.165325E-6	45.000004	30
ACCAACG	30	2.165325E-6	45.000004	38
AACGTGC	25	3.89058E-5	45.0	44
TAATACG	25	3.89058E-5	45.0	15
CAGCGAC	20	7.033016E-4	45.0	30
GTCGATT	20	7.033016E-4	45.0	16
GTCGAAT	25	3.89058E-5	45.0	16
TTAGCGA	20	7.033016E-4	45.0	1
ACTTCGA	20	7.033016E-4	45.0	31
CGATTTA	25	3.89058E-5	45.0	8
CGCGATG	25	3.89058E-5	45.0	13
TATTGCG	25	3.89058E-5	45.0	35
TGCATCG	25	3.89058E-5	45.0	35
GCCGATC	20	7.033016E-4	45.0	8
CTACGGT	25	3.89058E-5	45.0	22
CGAGGTT	35	1.2117926E-7	45.0	5