SRR1043441_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043441_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3006450
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	136223	4.5310249629962245	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	24961	0.8302482994894311	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13907	0.46257213657303464	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10261	0.3412995393237872	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8558	0.2846546591494953	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6062	0.2016331553825941	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4623	0.1537693957990321	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4528	0.15060952285918608	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4241	0.14106338039880922	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	4185	0.13920071845532106	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	36205	44.086456	1
CGTTTTA	1770	43.347458	1
CACTTAC	8030	41.46949	36
CGCACTT	8070	41.180298	34
ATTACGG	235	41.17021	1
ACTTACT	8045	41.084526	37
GCACTTA	8130	40.931732	35
TCACGAC	490	40.867348	24
ACCCGCA	8165	40.59094	31
CGGTCTA	510	40.588234	30
CCGCACT	8190	40.57692	33
CTTACTG	8180	40.296455	38
CCCGCAC	8285	40.19312	32
GCGCGAC	2395	39.551147	8
TTATGAC	8580	39.519234	26
TATGACC	8565	39.50963	27
GCATAGG	445	39.4382	1
CATGCGG	515	39.320393	1
CTTATGA	8640	39.270836	25
AACGCAA	8815	39.2059	17