FastQCFastQC Report
Thu 26 May 2016
SRR1043440_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043440_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences3375748
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1231213.647221297324326No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC249570.739302815257537No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT133120.3943422317068691No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC93220.2761462052262195No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC71860.21287133992229276No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55240.16363780708749587No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC48230.1428720390266098No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC43550.1290084449431652No Hit
GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG34240.10142937209768028No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT329000.043.926291
CGCACTT77200.041.1528534
ACCCGCA77300.041.12872331
CCGCACT77700.041.0038633
CCCGCAC78000.040.84615332
GCACTTA78500.040.52866435
CACTTAC78800.040.46002236
CTTACTG78800.040.2601538
ACTTACT79200.040.19886437
TTATGAC81200.039.84605826
TGACCCG79800.039.7556429
TATGACC81400.039.63759227
CTTATGA81800.039.60880325
CAACGCA83050.039.5544816
ATCAACG83000.039.52409714
TCAACGC83250.039.4864915
TATGCGG7650.039.4117621
TAGCATA20800.039.26682729
ACGGGAT7450.039.2617454
AACGCAA83750.039.25074817