SRR1043440_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043440_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3375748
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	123121	3.647221297324326	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	24957	0.739302815257537	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13312	0.3943422317068691	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9322	0.2761462052262195	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7186	0.21287133992229276	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5524	0.16363780708749587	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4823	0.1428720390266098	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4355	0.1290084449431652	No Hit
GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG	3424	0.10142937209768028	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	32900	43.92629	1
CGCACTT	7720	41.15285	34
ACCCGCA	7730	41.128723	31
CCGCACT	7770	41.00386	33
CCCGCAC	7800	40.846153	32
GCACTTA	7850	40.528664	35
CACTTAC	7880	40.460022	36
CTTACTG	7880	40.26015	38
ACTTACT	7920	40.198864	37
TTATGAC	8120	39.846058	26
TGACCCG	7980	39.75564	29
TATGACC	8140	39.637592	27
CTTATGA	8180	39.608803	25
CAACGCA	8305	39.55448	16
ATCAACG	8300	39.524097	14
TCAACGC	8325	39.48649	15
TATGCGG	765	39.411762	1
TAGCATA	2080	39.266827	29
ACGGGAT	745	39.261745	4
AACGCAA	8375	39.250748	17