##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043440_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3375748 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51760083987312 31.0 31.0 33.0 30.0 34.0 2 30.538090224744263 31.0 31.0 34.0 26.0 34.0 3 31.52129779829537 31.0 31.0 34.0 28.0 34.0 4 35.13838799578642 37.0 35.0 37.0 32.0 37.0 5 35.45741388278983 37.0 35.0 37.0 33.0 37.0 6 35.752287493023765 37.0 35.0 37.0 35.0 37.0 7 33.65259018149459 37.0 35.0 37.0 31.0 37.0 8 34.681657813320186 37.0 35.0 37.0 31.0 37.0 9 36.72464858158843 39.0 37.0 39.0 32.0 39.0 10 36.68962167792146 39.0 35.0 39.0 32.0 39.0 11 36.30613689173481 38.0 35.0 39.0 32.0 39.0 12 36.265658751778865 39.0 35.0 39.0 32.0 39.0 13 36.23446773870561 39.0 35.0 39.0 32.0 39.0 14 37.39393995049394 40.0 35.0 41.0 32.0 41.0 15 37.45190428906423 40.0 35.0 41.0 33.0 41.0 16 37.19671640181672 40.0 35.0 41.0 31.0 41.0 17 37.13970622214691 39.0 35.0 41.0 31.0 41.0 18 37.02070385585654 39.0 35.0 41.0 31.0 41.0 19 36.89786411781922 38.0 35.0 41.0 32.0 41.0 20 36.66665787849093 38.0 35.0 40.0 32.0 41.0 21 36.58909225451663 38.0 35.0 40.0 31.0 41.0 22 36.549304035727786 38.0 35.0 40.0 31.0 41.0 23 36.49849988802482 38.0 35.0 40.0 32.0 41.0 24 36.38828313013886 37.0 35.0 40.0 31.0 41.0 25 36.27192106756784 37.0 35.0 40.0 31.0 41.0 26 35.98904420590637 37.0 35.0 40.0 31.0 41.0 27 35.87769377335038 37.0 35.0 40.0 30.0 41.0 28 35.728120404722155 36.0 35.0 40.0 30.0 41.0 29 35.54173149180567 36.0 34.0 40.0 30.0 41.0 30 35.36886817380918 36.0 34.0 40.0 29.0 41.0 31 35.191553694173855 36.0 34.0 40.0 28.0 41.0 32 35.10832088177198 36.0 34.0 40.0 27.0 41.0 33 34.771736219646726 36.0 33.0 40.0 25.0 41.0 34 34.65392677415494 36.0 34.0 40.0 24.0 41.0 35 34.56507861368799 36.0 34.0 40.0 23.0 41.0 36 34.52079805720095 36.0 34.0 40.0 23.0 41.0 37 34.4333276654537 36.0 34.0 40.0 23.0 41.0 38 34.337523417032315 36.0 34.0 40.0 23.0 41.0 39 34.24601717900744 35.0 34.0 40.0 23.0 41.0 40 34.16917139549516 35.0 34.0 40.0 23.0 41.0 41 34.08058095568745 35.0 33.0 40.0 23.0 41.0 42 33.9511103909415 35.0 33.0 40.0 23.0 41.0 43 33.79158248779233 35.0 33.0 40.0 22.0 41.0 44 33.57023273064222 35.0 33.0 40.0 21.0 41.0 45 33.330337750329704 35.0 33.0 40.0 20.0 41.0 46 33.34670597449809 35.0 33.0 40.0 20.0 41.0 47 33.331349377974895 35.0 33.0 39.0 20.0 41.0 48 33.26579916510356 35.0 33.0 39.0 20.0 41.0 49 33.22605271483535 35.0 33.0 39.0 20.0 41.0 50 33.172174285521315 35.0 33.0 39.0 20.0 41.0 51 32.75713767733848 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 4.0 10 5.0 11 12.0 12 28.0 13 38.0 14 91.0 15 235.0 16 481.0 17 1125.0 18 2161.0 19 4110.0 20 6755.0 21 10397.0 22 15578.0 23 23120.0 24 34169.0 25 49630.0 26 65061.0 27 76609.0 28 84468.0 29 91507.0 30 102684.0 31 118169.0 32 141289.0 33 186869.0 34 358823.0 35 351364.0 36 314219.0 37 337219.0 38 426159.0 39 573053.0 40 315.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.275881967492833 17.513629571875626 23.805420309809854 29.405068150821684 2 32.08829569031811 20.64517256619866 27.15176014323344 20.11477160024978 3 26.456417955368707 21.458355303772674 32.899997274678086 19.18522946618053 4 23.545744528323798 24.09679277007644 30.52526432660258 21.832198374997187 5 21.47775841087664 32.992480481362946 29.18230270742958 16.34745840033083 6 81.10765377036438 2.3212336939842664 15.092121805300632 1.4789907303507253 7 76.59049194430389 7.63528557226428 14.047582935693068 1.7266395477387528 8 75.53283005721991 3.6871828110392126 17.522546114224166 3.25744101751671 9 46.47358155881304 17.259700664860055 23.32632649119543 12.940391285131472 10 34.189193032181315 17.44081607987326 29.45418319139936 18.915807696546068 11 31.208964650204933 14.864142702595098 36.27439014997565 17.65250249722432 12 24.524312833777877 17.15027306540654 36.83924273968317 21.486171361132406 13 18.652725262667712 20.06331633759392 41.65829321382994 19.625665185908428 14 21.634257059472446 17.70247660666614 41.50872636227586 19.154539971585557 15 27.55513740954597 15.084686416166134 39.19163989729091 18.16853627699698 16 25.022424659660615 16.556982333989385 36.80262863223203 21.617964374117975 17 25.714330572068768 19.2369809594792 36.85008478120997 18.198603687242056 18 25.416500283788956 24.883610980440483 32.06196078617243 17.637927949598133 19 27.632305491997627 22.330458316201327 31.071661747263125 18.96557444453792 20 26.207169492509514 25.08504781755036 32.9224219343387 15.785360755601424 21 22.56530996982002 20.530857161138805 36.2244752866624 20.67935758237878 22 25.477671911528944 20.213890373333555 34.826770244698366 19.48166747043914 23 27.189529550191544 18.593953103134474 35.049417195833335 19.167100150840643 24 26.976421225755004 17.0425932267456 32.620325924802444 23.360659622696957 25 20.14039555085273 18.759072063436015 35.92593404483984 25.17459834087142 26 17.61452572881625 19.816111866170104 36.852217641838195 25.717144763175448 27 19.208661310026695 23.469020791836357 35.52489700060549 21.79742089753145 28 23.947374033843758 23.552883686815484 32.43251569726176 20.067226582078995 29 23.085431732463444 20.44500952085286 37.869681030693044 18.599877715990647 30 29.17015725107443 19.572017816495784 33.65162328467646 17.606201647753327 31 29.65751590462321 20.492139816123718 31.437773198710328 18.41257108054274 32 29.826545109409825 19.619444342409444 30.449755135750657 20.104255412430074 33 23.078588804614565 22.084409144284468 35.2110998806783 19.625902170422673 34 20.813609309699658 25.620010735398495 34.28425344545861 19.28212650944324 35 23.244329849266 29.52705592953028 29.437357290887828 17.79125693031589 36 24.5080201484234 27.70144572402916 28.079909993281486 19.71062413426595 37 23.617935935976263 31.009423689209033 26.951448982566234 18.421191392248474 38 24.37030252258166 25.69072098983692 27.077258136567067 22.861718351014353 39 22.653497832184154 22.28460181269455 31.105461663607592 23.956438691513704 40 19.630878845221858 24.369798930488887 31.540713347086335 24.45860887720292 41 19.365248827815346 26.22799450669896 27.88706384481306 26.519692820672635 42 18.412097111514246 21.13300518877594 30.44279371564465 30.012103984065163 43 19.764597357385682 20.095635100724344 32.72498421090674 27.41478333098324 44 23.575752692440314 22.3897933139559 30.72507189517701 23.309382098426777 45 23.231443816303823 24.72995614601564 31.02171726088559 21.01688277679495 46 20.628909503908467 24.185395355340507 30.586435954342562 24.599259186408464 47 18.97887520040003 24.42951902807911 34.26141406289806 22.330191708622802 48 22.92052013361187 22.83967879118939 32.85340019456429 21.386400880634454 49 20.655185161925594 21.551549464000274 34.19736899792284 23.595896376151302 50 18.73487001991855 22.189482153288694 36.88829853413228 22.18734929266047 51 18.00620188473784 19.67341756552918 35.51912050307073 26.80126004666225 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1669.0 1 16937.5 2 32206.0 3 115983.5 4 199761.0 5 119875.0 6 39989.0 7 34216.5 8 28444.0 9 28175.5 10 27907.0 11 27766.5 12 27626.0 13 26359.5 14 25093.0 15 23505.5 16 21918.0 17 20510.0 18 19102.0 19 18176.0 20 17250.0 21 17277.0 22 17304.0 23 17147.5 24 16991.0 25 17508.0 26 20112.0 27 22199.0 28 24418.0 29 26637.0 30 31074.5 31 35512.0 32 38940.0 33 42368.0 34 48478.5 35 54589.0 36 59190.5 37 63792.0 38 68551.0 39 73310.0 40 82417.0 41 91524.0 42 102376.5 43 113229.0 44 125151.0 45 137073.0 46 147616.0 47 158159.0 48 175586.0 49 193013.0 50 186992.0 51 180971.0 52 167232.5 53 153494.0 54 160276.5 55 167059.0 56 177528.0 57 187997.0 58 198467.0 59 208937.0 60 219361.5 61 229786.0 62 227840.5 63 225895.0 64 206784.0 65 187673.0 66 151921.5 67 116170.0 68 91641.5 69 67113.0 70 56903.5 71 46694.0 72 43673.0 73 40652.0 74 34766.0 75 21844.0 76 14808.0 77 11162.5 78 7517.0 79 5779.5 80 4042.0 81 2891.0 82 1740.0 83 1329.5 84 919.0 85 669.5 86 420.0 87 291.5 88 163.0 89 115.0 90 67.0 91 51.0 92 35.0 93 25.5 94 16.0 95 11.5 96 7.0 97 4.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3375748.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.69464421408018 #Duplication Level Percentage of deduplicated Percentage of total 1 77.2314680617723 19.072036259165635 2 8.903801245730282 4.3975240783238645 3 2.9321457016699495 2.172248846597517 4 1.4565446246788711 1.4387540515350272 5 0.891488191552676 1.1007491855723548 6 0.677969586482229 1.0045330635687426 7 0.5052061387401382 0.873312009566986 8 0.41296427875203745 0.8158404749524638 9 0.3524970604305007 0.7834310544456303 >10 5.162143362488521 30.839437832995483 >50 1.2318900739133645 20.730356922675057 >100 0.2328798265868834 8.679165893561997 >500 0.005401108321379997 0.9156748047523713 >1k 0.00282915197786571 1.3520446282975715 >5k 3.8579345152714233E-4 0.6996652319589453 >10k+ 3.8579345152714233E-4 5.125225662030418 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 123121 3.647221297324326 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 24957 0.739302815257537 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13312 0.3943422317068691 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9322 0.2761462052262195 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 7186 0.21287133992229276 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5524 0.16363780708749587 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4823 0.1428720390266098 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4355 0.1290084449431652 No Hit GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG 3424 0.10142937209768028 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03892470646505604 0.0 2 0.0 0.0 0.0 0.12444649304391205 0.0 3 0.0 0.0 0.0 0.19986681470299322 0.0 4 0.0 0.0 0.0 0.24856713238073458 0.0 5 0.0 0.0 0.0 0.5380140934690623 0.0 6 0.0 0.0 0.0 0.6534847980358723 0.0 7 0.0 0.0 0.0 0.9540404082295243 0.0 8 0.0 0.0 0.0 1.3238843657761183 0.0 9 0.0 0.0 0.0 1.6617650369636596 0.0 10 0.0 0.0 0.0 1.8814200586062704 0.0 11 0.0 0.0 0.0 2.0785023052668623 0.001925499178256197 12 0.0 0.0 0.0 2.2327199779130433 0.001925499178256197 13 0.0 0.0 0.0 2.320522740441526 0.001925499178256197 14 0.0 0.0 0.0 2.383945721066857 0.001925499178256197 15 0.0 0.0 0.0 2.548620335404183 0.001925499178256197 16 0.0 0.0 0.0 2.7313057728242747 0.001925499178256197 17 0.0 0.0 0.0 2.967283102885642 0.001925499178256197 18 0.0 0.0 0.0 3.1126434793118443 0.001925499178256197 19 0.0 0.0 0.0 3.276073924949374 0.001925499178256197 20 0.0 0.0 0.0 3.4650098289327285 0.001925499178256197 21 0.0 0.0 0.0 3.6548344248445086 0.001925499178256197 22 0.0 0.0 0.0 3.838467800321588 0.001925499178256197 23 0.0 0.0 0.0 4.019583215334794 0.001925499178256197 24 2.9623064280864568E-5 0.0 0.0 4.177089048116151 0.001925499178256197 25 2.9623064280864568E-5 0.0 0.0 4.332491643333566 0.001925499178256197 26 2.9623064280864568E-5 0.0 0.0 4.488397830643756 0.001925499178256197 27 2.9623064280864568E-5 0.0 0.0 4.658937811708694 0.001925499178256197 28 2.9623064280864568E-5 0.0 0.0 4.830336861637776 0.001925499178256197 29 2.9623064280864568E-5 0.0 0.0 5.016606689835853 0.001925499178256197 30 2.9623064280864568E-5 0.0 0.0 5.194552436971006 0.001925499178256197 31 2.9623064280864568E-5 0.0 0.0 5.395396812795268 0.001925499178256197 32 2.9623064280864568E-5 0.0 0.0 5.621717023901073 0.001925499178256197 33 2.9623064280864568E-5 0.0 0.0 5.835802909458882 0.001925499178256197 34 2.9623064280864568E-5 0.0 0.0 6.090739000660002 0.001925499178256197 35 2.9623064280864568E-5 0.0 0.0 6.315044843394708 0.001925499178256197 36 2.9623064280864568E-5 0.0 0.0 6.5631972528755105 0.001925499178256197 37 2.9623064280864568E-5 0.0 0.0 6.927472074337302 0.001925499178256197 38 2.9623064280864568E-5 0.0 0.0 7.2867998440641895 0.001925499178256197 39 2.9623064280864568E-5 0.0 0.0 7.772381113756121 0.001925499178256197 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 32900 0.0 43.92629 1 CGCACTT 7720 0.0 41.15285 34 ACCCGCA 7730 0.0 41.128723 31 CCGCACT 7770 0.0 41.00386 33 CCCGCAC 7800 0.0 40.846153 32 GCACTTA 7850 0.0 40.528664 35 CACTTAC 7880 0.0 40.460022 36 CTTACTG 7880 0.0 40.26015 38 ACTTACT 7920 0.0 40.198864 37 TTATGAC 8120 0.0 39.846058 26 TGACCCG 7980 0.0 39.75564 29 TATGACC 8140 0.0 39.637592 27 CTTATGA 8180 0.0 39.608803 25 CAACGCA 8305 0.0 39.55448 16 ATCAACG 8300 0.0 39.524097 14 TCAACGC 8325 0.0 39.48649 15 TATGCGG 765 0.0 39.411762 1 TAGCATA 2080 0.0 39.266827 29 ACGGGAT 745 0.0 39.261745 4 AACGCAA 8375 0.0 39.250748 17 >>END_MODULE