SRR1043439_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043439_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	755370
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48421	6.410236043263566	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5026	0.6653692892225003	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1988	0.2631822815309054	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1078	0.14271151885830785	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	911	0.12060314812608391	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	60	0.0	45.000004	1
CTAACGG	70	0.0	45.000004	1
CCCCGAA	30	2.16451E-6	45.000004	24
CGCTAAG	30	2.16451E-6	45.000004	9
TACCTCC	35	1.2111923E-7	45.000004	10
ATAACGG	30	2.16451E-6	45.000004	1
TCGGTAG	30	2.16451E-6	45.000004	27
GTCGGTT	35	1.2111923E-7	45.000004	37
AAGTAAC	20	7.031749E-4	45.0	15
CTATCCG	25	3.8895316E-5	45.0	15
GACGTGT	45	3.8380676E-10	45.0	43
TTATGCA	20	7.031749E-4	45.0	12
ATTACGT	20	7.031749E-4	45.0	33
TAAACGG	40	6.8102963E-9	45.0	1
GCTGCGC	25	3.8895316E-5	45.0	15
TGACGGA	20	7.031749E-4	45.0	2
TGCGAGC	20	7.031749E-4	45.0	3
AGGCACG	20	7.031749E-4	45.0	19
ACAATTG	40	6.8102963E-9	45.0	45
ACTACGG	40	6.8102963E-9	45.0	1