##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043439_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 755370 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48719038352066 31.0 31.0 33.0 30.0 34.0 2 30.518430702834372 31.0 31.0 34.0 26.0 34.0 3 31.422917245853025 31.0 31.0 34.0 28.0 34.0 4 35.04777261474509 37.0 35.0 37.0 32.0 37.0 5 35.37272992043634 37.0 35.0 37.0 33.0 37.0 6 35.79116724254339 37.0 35.0 37.0 35.0 37.0 7 33.708289977097316 37.0 35.0 37.0 32.0 37.0 8 34.73504242953784 37.0 35.0 37.0 31.0 37.0 9 36.718610747051116 39.0 37.0 39.0 32.0 39.0 10 36.676492315024426 39.0 35.0 39.0 32.0 39.0 11 36.40026741861604 38.0 35.0 39.0 32.0 39.0 12 36.29306300223731 39.0 35.0 39.0 32.0 39.0 13 36.368938401048496 39.0 35.0 39.0 32.0 39.0 14 37.71130968929134 40.0 36.0 41.0 33.0 41.0 15 37.88083720560785 40.0 36.0 41.0 33.0 41.0 16 37.85685822841786 40.0 36.0 41.0 33.0 41.0 17 37.792840594675454 40.0 36.0 41.0 33.0 41.0 18 37.51820697141798 39.0 36.0 41.0 33.0 41.0 19 37.21669115797556 38.0 35.0 41.0 33.0 41.0 20 36.8892992837947 38.0 35.0 41.0 32.0 41.0 21 36.78965010524644 38.0 35.0 40.0 32.0 41.0 22 36.692530812714296 38.0 35.0 40.0 32.0 41.0 23 36.594500708262174 37.0 35.0 40.0 32.0 41.0 24 36.44646067490104 37.0 35.0 40.0 32.0 41.0 25 36.329232031984326 37.0 35.0 40.0 32.0 41.0 26 36.0549876219601 36.0 35.0 40.0 31.0 41.0 27 35.95329970742815 36.0 35.0 40.0 31.0 41.0 28 35.86293604458742 36.0 35.0 40.0 31.0 41.0 29 35.761573798271044 36.0 35.0 40.0 31.0 41.0 30 35.574247057733295 36.0 35.0 40.0 30.0 41.0 31 35.11665144233952 35.0 34.0 40.0 28.0 41.0 32 34.905275560321435 35.0 34.0 40.0 26.0 41.0 33 34.77622489640838 35.0 34.0 40.0 25.0 41.0 34 34.573352132067726 35.0 34.0 40.0 24.0 41.0 35 34.33711558573944 35.0 34.0 40.0 23.0 41.0 36 34.174114672279806 35.0 34.0 40.0 22.0 41.0 37 34.09855302699339 35.0 33.0 40.0 22.0 41.0 38 34.02848934959027 35.0 33.0 40.0 21.0 41.0 39 33.91048757562519 35.0 33.0 40.0 21.0 41.0 40 33.84323179369051 35.0 33.0 40.0 21.0 41.0 41 33.780330169321 35.0 33.0 40.0 21.0 41.0 42 33.66592398427261 35.0 33.0 40.0 20.0 41.0 43 33.51390444417967 35.0 33.0 40.0 19.0 41.0 44 33.3072904669235 35.0 33.0 40.0 18.0 41.0 45 33.14692931940638 35.0 33.0 40.0 18.0 41.0 46 33.14120894396124 35.0 33.0 40.0 18.0 41.0 47 33.133738432821005 35.0 33.0 40.0 18.0 41.0 48 33.07751962614348 35.0 33.0 40.0 18.0 41.0 49 32.98552629837034 35.0 33.0 39.0 18.0 41.0 50 32.86590412645459 35.0 33.0 39.0 18.0 41.0 51 32.49022465811456 35.0 32.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 7.0 14 14.0 15 34.0 16 83.0 17 209.0 18 451.0 19 839.0 20 1389.0 21 2221.0 22 3536.0 23 5663.0 24 8551.0 25 13051.0 26 16514.0 27 18094.0 28 18091.0 29 18736.0 30 20523.0 31 24511.0 32 29879.0 33 39160.0 34 65717.0 35 94476.0 36 87476.0 37 68734.0 38 85791.0 39 131542.0 40 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.655996399115665 19.18940386830295 25.214265856467694 30.94033387611369 2 32.17231290625786 20.67556296914095 28.811178627692392 18.3409454969088 3 21.32676701484041 21.094562929425315 39.88098547731575 17.697684578418524 4 21.51568105696546 24.46827382607199 36.45140791929783 17.56463719766472 5 19.037292982247113 30.67437150005957 34.06833737108966 16.21999814660365 6 77.35454148298186 1.9942544713186916 19.10600103260654 1.5452030130929213 7 73.71989885751353 7.411731998887962 17.23234970941393 1.6360194341845717 8 72.83318109006183 4.151475435879106 20.375047989726887 2.6402954843321815 9 38.853806743715005 23.853740550988256 26.3963355706475 10.896117134649245 10 28.972159339131814 24.91189748070482 35.69456028171625 10.421382898447117 11 27.270344334564516 22.15377894276977 37.5454413069092 13.030435415756516 12 19.067874022002464 30.239485285356842 36.52607331506414 14.166567377576552 13 13.929994572196408 33.4715437467731 36.37899307624078 16.219468604789704 14 12.527238307054823 26.144803209023394 44.89018626633305 16.43777221758873 15 14.232098177052304 24.20310576273879 44.51566781842011 17.049128241788793 16 15.827475277016562 25.126229529899252 35.955756781444855 23.09053841163933 17 16.68334723380595 25.329441201000837 40.58938003892133 17.397831526271894 18 20.83508744059203 27.408025206190345 35.46354766538253 16.2933396878351 19 21.02611964997286 26.89966506480268 35.59368256615963 16.48053271906483 20 16.115943180163363 30.561049551875243 37.07560533248607 16.24740193547533 21 17.890305413241194 27.538822034234876 34.638653904708946 19.932218647814977 22 13.89160279068536 30.498034076015728 35.23478560175808 20.375577531540834 23 12.855289460794047 27.16748083720561 44.575506043395954 15.401723658604393 24 14.494486145862293 27.72654460727855 41.32636985847995 16.452599388379205 25 13.69130359956048 32.643737506122825 36.35291314190397 17.312045752412725 26 13.592279280352676 33.079285648092984 36.39514410156612 16.933290969988217 27 13.530322888121052 31.26428108079484 40.08816871202192 15.117227319062183 28 13.00912135774521 28.14316162940016 39.07952394190926 19.768193070945365 29 14.443782517177011 32.89076876232839 37.05508558719568 15.610363133298913 30 19.055826945735202 30.66761984193177 34.269430874935466 16.00712233739757 31 18.51860677548751 30.706541165256763 34.696903504242954 16.077948555012775 32 16.882719726756424 33.02103604855898 33.24278168314866 16.853462541535936 33 14.144856163204786 31.818578974542277 34.45781537524657 19.578749487006366 34 14.396653295735865 30.511669777724826 35.48380263976594 19.60787428677337 35 19.664402875412048 30.9392747924858 32.954975707269284 16.441346624832864 36 15.01767345804043 33.36748878033281 34.281477951202724 17.33335981042403 37 14.871652302844963 32.88441426056105 33.96772442644002 18.276209010153966 38 14.769847889113944 33.748891271827056 33.259991792101886 18.22126904695712 39 18.141175847597864 30.82145173888293 32.17151859353694 18.86585381998226 40 13.852681467360368 29.118048108873793 34.84199796126401 22.18727246250182 41 15.460238029045367 30.731032474151743 31.95784847160994 21.850881025192955 42 15.414035505778626 30.760024888465253 32.96265406357149 20.863285542184627 43 15.254775805234521 31.68195718654434 34.26982803129592 18.793438976925213 44 12.908773184002541 36.79812542197863 31.459152468326778 18.833948925692045 45 16.310417411334843 33.59969286574791 32.01742192567881 18.07246779723844 46 14.761772376451276 32.44621840952116 31.836318625309453 20.955690588718113 47 14.347008750678475 31.586110118220212 35.00880363265684 19.05807749844447 48 15.648490143902988 29.802083747037877 34.61853131577902 19.930894793280114 49 15.929544461654555 31.905688602936312 32.89566702410739 19.269099911301744 50 13.872804056290294 31.324384076677653 33.59730992758516 21.205501939446894 51 14.335623601678648 29.835974423130384 34.310073209155775 21.51832876603519 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 993.0 1 5043.5 2 9094.0 3 34439.0 4 59784.0 5 35043.5 6 10303.0 7 10436.0 8 10569.0 9 12463.5 10 14358.0 11 16145.0 12 17932.0 13 17509.5 14 17087.0 15 15341.0 16 13595.0 17 11800.5 18 10006.0 19 8927.0 20 7848.0 21 7243.0 22 6638.0 23 6266.5 24 5895.0 25 6438.0 26 6849.5 27 6718.0 28 8094.5 29 9471.0 30 10670.5 31 11870.0 32 13816.0 33 15762.0 34 17270.0 35 18778.0 36 21164.5 37 23551.0 38 25692.5 39 27834.0 40 31454.5 41 35075.0 42 41677.5 43 48280.0 44 52307.0 45 56334.0 46 56601.5 47 56869.0 48 56875.5 49 56882.0 50 52525.5 51 48169.0 52 43014.5 53 37860.0 54 33271.0 55 28682.0 56 25952.5 57 23223.0 58 21252.5 59 19282.0 60 15540.0 61 11798.0 62 10245.5 63 8693.0 64 7129.0 65 5565.0 66 4517.5 67 3470.0 68 3211.0 69 2952.0 70 2634.5 71 2317.0 72 2070.0 73 1823.0 74 1559.5 75 1037.0 76 778.0 77 599.5 78 421.0 79 377.5 80 334.0 81 217.5 82 101.0 83 79.5 84 58.0 85 41.5 86 25.0 87 16.5 88 8.0 89 7.5 90 7.0 91 3.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 755370.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.53283038709573 #Duplication Level Percentage of deduplicated Percentage of total 1 78.65870776897513 27.949665216231224 2 9.234478713566958 6.562543316848414 3 3.427709607974959 3.653886723491779 4 1.836401348519643 2.6101015055832937 5 1.1222230744777635 1.9937881080951736 6 0.782287608081196 1.6678135735125574 7 0.5550956473987908 1.3806883641345433 8 0.4384299443421148 1.246292547914575 9 0.3176775298161441 1.0159183606273734 >10 2.9373737816998773 23.45378625374902 >50 0.5667591982009766 13.67568733297414 >100 0.11783337097065355 6.1951806645776015 >500 0.003477050290937318 0.8367042511600186 >1k 7.726778424305149E-4 0.42089175292151226 >5k 3.8633892121525746E-4 0.6899549739672278 >10k+ 3.8633892121525746E-4 6.647097054211527 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48421 6.410236043263566 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5026 0.6653692892225003 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1988 0.2631822815309054 No Hit GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA 1078 0.14271151885830785 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 911 0.12060314812608391 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10259872645193746 0.0 2 0.0 0.0 0.0 0.3296397791810636 0.0 3 0.0 0.0 0.0 0.5357639302593431 0.0 4 0.0 0.0 0.0 0.672782874617737 0.0 5 0.0 0.0 0.0 1.4948965407681003 0.0 6 0.0 0.0 0.0 1.7195546553344718 0.0 7 0.0 0.0 0.0 2.384129631836054 0.0 8 0.0 0.0 0.0 3.130518818592213 0.0 9 0.0 0.0 0.0 3.6964666322464486 0.0 10 0.0 0.0 0.0 4.086606563670784 0.0 11 0.0 0.0 0.0 4.552338589035837 0.0 12 0.0 0.0 0.0 4.9166633570303295 0.0 13 0.0 0.0 0.0 5.088234904748666 0.0 14 0.0 0.0 0.0 5.2206203582350375 0.0 15 0.0 0.0 0.0 5.681851278181553 0.0 16 0.0 0.0 0.0 6.223837324754756 0.0 17 0.0 0.0 0.0 6.886426519454043 0.0 18 0.0 0.0 0.0 7.210373724135192 0.0 19 0.0 0.0 0.0 7.599454571931636 0.0 20 0.0 0.0 0.0 8.028912983041423 0.0 21 1.323854534863709E-4 0.0 0.0 8.439175503395687 0.0 22 1.323854534863709E-4 0.0 0.0 8.873399790830984 0.0 23 3.9715636045911277E-4 0.0 0.0 9.23097290069767 0.0 24 0.0019857818022955636 0.0 0.0 9.536650912797702 0.0 25 0.0019857818022955636 0.0 0.0 9.82816368137469 0.0 26 0.0019857818022955636 0.0 0.0 10.14482968611409 0.0 27 0.0019857818022955636 0.0 0.0 10.443756040086315 0.0 28 0.0021181672557819345 0.0 0.0 10.759362961197823 0.0 29 0.0021181672557819345 0.0 0.0 11.15890225981969 0.0 30 0.0021181672557819345 0.0 0.0 11.531567311383824 0.0 31 0.0021181672557819345 0.0 0.0 11.864913883262506 0.0 32 0.0021181672557819345 0.0 0.0 12.188199160676225 0.0 33 0.0021181672557819345 0.0 0.0 12.53743198697327 0.0 34 0.0021181672557819345 0.0 0.0 12.948753590955425 0.0 35 0.0021181672557819345 0.0 0.0 13.296397791810636 0.0 36 0.0021181672557819345 0.0 0.0 13.62855289460794 0.0 37 0.0022505527092683054 0.0 0.0 13.99446628804427 0.0 38 0.0022505527092683054 0.0 0.0 14.3691171214107 0.0 39 0.0022505527092683054 0.0 0.0 14.747209976567774 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGG 60 0.0 45.000004 1 CTAACGG 70 0.0 45.000004 1 CCCCGAA 30 2.16451E-6 45.000004 24 CGCTAAG 30 2.16451E-6 45.000004 9 TACCTCC 35 1.2111923E-7 45.000004 10 ATAACGG 30 2.16451E-6 45.000004 1 TCGGTAG 30 2.16451E-6 45.000004 27 GTCGGTT 35 1.2111923E-7 45.000004 37 AAGTAAC 20 7.031749E-4 45.0 15 CTATCCG 25 3.8895316E-5 45.0 15 GACGTGT 45 3.8380676E-10 45.0 43 TTATGCA 20 7.031749E-4 45.0 12 ATTACGT 20 7.031749E-4 45.0 33 TAAACGG 40 6.8102963E-9 45.0 1 GCTGCGC 25 3.8895316E-5 45.0 15 TGACGGA 20 7.031749E-4 45.0 2 TGCGAGC 20 7.031749E-4 45.0 3 AGGCACG 20 7.031749E-4 45.0 19 ACAATTG 40 6.8102963E-9 45.0 45 ACTACGG 40 6.8102963E-9 45.0 1 >>END_MODULE