FastQCFastQC Report
Thu 26 May 2016
SRR1043438_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043438_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2866663
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1024463.5737022454331044No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC230030.8024312589237033No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT108400.3781400185511865No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC82120.2864654826884081No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC64440.22479098519777177No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA43660.1523025203869447No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43520.15181414766925863No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC41880.14609321011922224No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC41500.14476762702836016No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGCTA207.035053E-445.020
CGTTTTT289400.043.911541
TATACGG2000.042.7499961
TCGATTA2750.041.72727240
TACGCGG3200.041.4843751
CGTTTTA15200.040.707241
CACTTAC69450.040.56155436
ACTTACT69150.040.542337
CATGCGG5500.040.51
CGCACTT69500.040.534
TAGTAGG5900.040.423731
ACCCGCA69850.040.29706631
CTTACTG69350.040.26315738
GCACTTA69850.040.23264335
CTAGCGG8400.040.1785741
CCCGCAC71300.039.73001532
GGCGATA5000.039.6000027
GGTACCT20700.039.565227
CCGCACT71150.039.56078733
GGGTACC22450.039.3875276