SRR1043438_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043438_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2866663
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102446	3.5737022454331044	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	23003	0.8024312589237033	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10840	0.3781400185511865	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8212	0.2864654826884081	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6444	0.22479098519777177	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4366	0.1523025203869447	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4352	0.15181414766925863	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4188	0.14609321011922224	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4150	0.14476762702836016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGCTA	20	7.035053E-4	45.0	20
CGTTTTT	28940	0.0	43.91154	1
TATACGG	200	0.0	42.749996	1
TCGATTA	275	0.0	41.727272	40
TACGCGG	320	0.0	41.484375	1
CGTTTTA	1520	0.0	40.70724	1
CACTTAC	6945	0.0	40.561554	36
ACTTACT	6915	0.0	40.5423	37
CATGCGG	550	0.0	40.5	1
CGCACTT	6950	0.0	40.5	34
TAGTAGG	590	0.0	40.42373	1
ACCCGCA	6985	0.0	40.297066	31
CTTACTG	6935	0.0	40.263157	38
GCACTTA	6985	0.0	40.232643	35
CTAGCGG	840	0.0	40.178574	1
CCCGCAC	7130	0.0	39.730015	32
GGCGATA	500	0.0	39.600002	7
GGTACCT	2070	0.0	39.56522	7
CCGCACT	7115	0.0	39.560787	33
GGGTACC	2245	0.0	39.387527	6