##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043438_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2866663 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50110215257252 31.0 31.0 33.0 30.0 34.0 2 30.54385813749297 31.0 31.0 34.0 26.0 34.0 3 31.52108043394009 31.0 31.0 34.0 28.0 34.0 4 35.150269145693095 37.0 35.0 37.0 32.0 37.0 5 35.46931153051475 37.0 35.0 37.0 33.0 37.0 6 35.73500721919528 37.0 35.0 37.0 35.0 37.0 7 33.70793567294098 37.0 35.0 37.0 32.0 37.0 8 34.71376509900187 37.0 35.0 37.0 31.0 37.0 9 36.74002071397998 39.0 37.0 39.0 32.0 39.0 10 36.70429066827876 39.0 35.0 39.0 32.0 39.0 11 36.45424418566117 39.0 35.0 39.0 32.0 39.0 12 36.447868130994124 39.0 35.0 39.0 32.0 39.0 13 36.45603825772335 39.0 35.0 39.0 32.0 39.0 14 37.64886245784733 40.0 35.0 41.0 33.0 41.0 15 37.723359529878465 40.0 35.0 41.0 33.0 41.0 16 37.514390076545446 40.0 35.0 41.0 32.0 41.0 17 37.455845350499864 40.0 35.0 41.0 32.0 41.0 18 37.27979605555309 39.0 35.0 41.0 32.0 41.0 19 37.11911515235659 38.0 35.0 41.0 32.0 41.0 20 36.86665506200066 38.0 35.0 41.0 32.0 41.0 21 36.77203145259837 38.0 35.0 40.0 32.0 41.0 22 36.715020914561634 38.0 35.0 40.0 32.0 41.0 23 36.65238571816778 38.0 35.0 40.0 32.0 41.0 24 36.53016486416436 38.0 35.0 40.0 31.0 41.0 25 36.408800755442826 38.0 35.0 40.0 31.0 41.0 26 36.12079654985605 37.0 35.0 40.0 31.0 41.0 27 36.01193094549307 37.0 35.0 40.0 30.0 41.0 28 35.838325955998314 37.0 35.0 40.0 30.0 41.0 29 35.71196684088782 37.0 35.0 40.0 30.0 41.0 30 35.54065092408839 37.0 34.0 40.0 29.0 41.0 31 35.31923424553217 37.0 34.0 40.0 28.0 41.0 32 35.187018146186 37.0 34.0 40.0 27.0 41.0 33 34.87841961193206 37.0 34.0 40.0 25.0 41.0 34 34.72991000337326 37.0 34.0 40.0 24.0 41.0 35 34.591390058754726 37.0 34.0 40.0 23.0 41.0 36 34.4921733039426 36.0 34.0 40.0 23.0 41.0 37 34.35668475855027 36.0 34.0 40.0 23.0 41.0 38 34.22852389694917 36.0 34.0 40.0 23.0 41.0 39 34.10141757158061 36.0 33.0 40.0 22.0 41.0 40 33.99916941754228 35.0 33.0 40.0 22.0 41.0 41 33.906334996474996 35.0 33.0 40.0 22.0 41.0 42 33.78177448831621 35.0 33.0 40.0 22.0 41.0 43 33.60139681574012 35.0 33.0 40.0 21.0 41.0 44 33.377346064047295 35.0 33.0 40.0 20.0 41.0 45 33.16327451116507 35.0 33.0 39.0 20.0 41.0 46 33.14494169701845 35.0 33.0 39.0 20.0 41.0 47 33.11955992036734 35.0 33.0 39.0 20.0 41.0 48 33.02455886862181 35.0 33.0 39.0 20.0 41.0 49 32.979678462379425 35.0 33.0 39.0 20.0 41.0 50 32.9047181339418 35.0 33.0 39.0 20.0 41.0 51 32.47838549560935 35.0 32.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 2.0 10 1.0 11 11.0 12 21.0 13 28.0 14 61.0 15 170.0 16 365.0 17 838.0 18 1866.0 19 3411.0 20 5477.0 21 8659.0 22 13384.0 23 19841.0 24 29715.0 25 43752.0 26 57521.0 27 67977.0 28 72824.0 29 76954.0 30 84614.0 31 97049.0 32 115020.0 33 151361.0 34 275586.0 35 288098.0 36 286455.0 37 312887.0 38 383137.0 39 469343.0 40 232.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.339549155237293 17.175231270644648 23.381925255950907 30.10329431816715 2 32.13073877187517 19.9761534578707 26.35370812683598 21.539399643418147 3 25.75381201068978 21.35088777439134 33.37762408765872 19.517676127260163 4 23.43362299649453 24.137891339163343 30.614411250991136 21.814074413350994 5 21.304910971397753 33.316891451837904 29.00860687147391 16.369590705290438 6 81.41972042057263 2.1662469568275027 15.04557738387805 1.368455238721817 7 77.09552884311829 7.337102407921685 14.122448296154797 1.4449204528052304 8 76.21199282929315 3.66129538072665 17.024079914520822 3.102631875459376 9 45.34209287942112 17.32519657873981 22.919889781254373 14.412820760584694 10 30.889434858579467 18.305883879618918 29.696514728100233 21.108166533701382 11 27.47605839960958 15.006298263869871 38.228769827496286 19.288873509024256 12 23.290146068791483 16.99334731707215 38.255386140610184 21.461120473526186 13 19.238606002868146 19.88036263767314 41.14829681758895 19.73273454186976 14 19.915630124643183 18.090581278650472 41.3301458873959 20.66364270931044 15 24.99885755667827 15.125496090750815 39.55271338137758 20.322932971193335 16 24.226984476375492 16.195555598966465 36.13853459580007 23.43892532885798 17 24.56301978990903 18.943105624902543 35.93812736272105 20.555747222467378 18 24.93878771240289 22.983064280663616 32.42637868490297 19.65176932203053 19 27.220639468259783 21.1057595538785 31.33995869064484 20.33364228721688 20 26.362289533161032 23.048122503412504 33.48374050245878 17.10584746096768 21 23.282122802715215 18.604977285436064 35.48062677754588 22.632273134302846 22 25.085508830301993 20.18221186096866 34.1789041823193 20.553375126410046 23 26.180545114650727 19.216838533165564 34.9134167497191 19.68919960246461 24 27.143825416520883 17.349057074375327 32.377715831962114 23.12940167714168 25 21.780551114658405 19.1404779703788 34.26796243576591 24.811008479196893 26 19.1545012441295 19.431896947775165 36.11533689170997 25.29826491638536 27 20.87974763688651 22.19751676426563 35.228521803923236 21.69421379492462 28 24.041960983903586 22.80690126464115 32.32099482917943 20.830142922275833 29 22.877819960002274 20.153258335562988 36.437209396430625 20.531712308004117 30 28.15789648103038 20.016374439548702 32.1122503761342 19.713478703286714 31 28.58787377518739 20.321572504336924 30.819702211247012 20.270851509228674 32 28.147640653958977 19.639036747605143 30.36286441761728 21.850458180818602 33 23.781483906549184 21.97255136024011 33.670333764380395 20.575630968830307 34 23.170145915302914 24.017786534378125 32.01419211117595 20.797875439143006 35 25.586300168523472 27.05539507085416 28.381187464309548 18.97711729631282 36 25.591916454776857 25.31434633230345 27.801454164650675 21.292283048269013 37 25.09838093978957 28.763025162008926 26.394243062403916 19.74435083579758 38 25.138043781218787 23.963577162714973 27.2375929783166 23.660786077749634 39 23.852542136972502 21.932504797389857 31.19683060059728 23.01812246504036 40 21.66564399093999 23.338041478890265 31.147225885986597 23.84908864418315 41 21.482887943228764 25.99283557223155 27.58381435139045 24.94046213314924 42 20.917736057569375 21.31701563804326 29.766142724136042 27.99910558025132 43 22.15024926194673 20.214235157742642 32.09543640113958 25.540079179171045 44 24.23270541392553 22.613052179485347 30.39558538970224 22.758657016886882 45 25.04929948166213 23.320843782474608 30.244782871233905 21.385073864629362 46 22.18485395737134 24.185333260309985 30.111945492023306 23.51786729029537 47 21.410155292059095 25.291009093151168 31.614354390453293 21.684481224336448 48 23.887530553818152 23.90117010614781 30.889120904689527 21.32217843534451 49 22.013330482166896 22.138214362832326 32.805355913827334 23.043099241173447 50 21.045759477134215 23.010866641806167 33.874927049325294 22.06844683173432 51 20.816573137477267 20.763689348904983 33.30489143648905 25.114846077128703 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1238.0 1 12677.5 2 24117.0 3 90838.5 4 157560.0 5 96106.5 6 34653.0 7 30807.5 8 26962.0 9 26731.5 10 26501.0 11 26513.5 12 26526.0 13 25215.5 14 23905.0 15 22055.5 16 20206.0 17 18884.5 18 17563.0 19 16205.0 20 14847.0 21 14348.5 22 13850.0 23 13706.5 24 13563.0 25 13727.0 26 15484.5 27 17078.0 28 18203.0 29 19328.0 30 22129.5 31 24931.0 32 28579.0 33 32227.0 34 36747.5 35 41268.0 36 44663.5 37 48059.0 38 50304.0 39 52549.0 40 58718.0 41 64887.0 42 75667.5 43 86448.0 44 92682.0 45 98916.0 46 105740.5 47 112565.0 48 132192.5 49 151820.0 50 156479.5 51 161139.0 52 156256.5 53 151374.0 54 155244.0 55 159114.0 56 166087.5 57 173061.0 58 179181.5 59 185302.0 60 189837.5 61 194373.0 62 187856.5 63 181340.0 64 167791.0 65 154242.0 66 131200.5 67 108159.0 68 88781.0 69 69403.0 70 60182.5 71 50962.0 72 48789.0 73 46616.0 74 39219.5 75 24236.0 76 16649.0 77 12751.5 78 8854.0 79 6633.0 80 4412.0 81 3360.0 82 2308.0 83 1800.0 84 1292.0 85 891.5 86 491.0 87 332.5 88 174.0 89 118.5 90 63.0 91 46.0 92 29.0 93 22.0 94 15.0 95 11.5 96 8.0 97 5.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2866663.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.839638136832676 #Duplication Level Percentage of deduplicated Percentage of total 1 77.23018874928357 19.956001305207735 2 8.34705959096363 4.313699986741575 3 2.8091408006763725 2.177615452946696 4 1.497629167019368 1.5479278295578647 5 0.965792605897387 1.2477865725808566 6 0.71063654007328 1.1017554625382608 7 0.5735566696941753 1.0374347757105047 8 0.4499600382725359 0.9301443651998165 9 0.3958226014934344 0.9205121510073064 >10 5.857216657446914 35.918137810508746 >50 1.0154081110554698 17.27026854454966 >100 0.13866252147848426 5.560813011453864 >500 0.005758675255091788 0.9947047359597283 >1k 0.0024474369834140103 1.407965325801406 >5k 2.8793376275458945E-4 0.5452108384840786 >10k+ 4.3190064413188415E-4 5.0700218317519505 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 102446 3.5737022454331044 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 23003 0.8024312589237033 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10840 0.3781400185511865 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8212 0.2864654826884081 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6444 0.22479098519777177 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 4366 0.1523025203869447 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4352 0.15181414766925863 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4188 0.14609321011922224 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4150 0.14476762702836016 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030488411089828138 0.0 2 0.0 0.0 0.0 0.09948849934575497 0.0 3 0.0 0.0 0.0 0.16287230134829242 0.0 4 0.0 0.0 0.0 0.2041049122272133 0.0 5 0.0 0.0 0.0 0.4405121913528029 0.0 6 0.0 0.0 0.0 0.5438727886744972 0.0 7 0.0 0.0 0.0 0.8069661484450736 0.0 8 0.0 0.0 0.0 1.1095130470515717 0.0 9 0.0 0.0 0.0 1.4000948140747622 0.0 10 0.0 0.0 0.0 1.5735717801499514 0.0 11 0.0 0.0 0.0 1.7389208288522229 0.0 12 0.0 0.0 0.0 1.8703628574408642 0.0 13 0.0 0.0 0.0 1.9400955047733202 0.0 14 0.0 0.0 0.0 1.9930141771111567 0.0 15 0.0 0.0 0.0 2.134467846412362 0.0 16 0.0 0.0 0.0 2.2893517654499327 0.0 17 0.0 0.0 0.0 2.5015148275189656 0.0 18 0.0 0.0 0.0 2.620433584275515 0.0 19 0.0 0.0 0.0 2.753759336203802 0.0 20 0.0 0.0 0.0 2.907980463695942 0.0 21 3.4883765549002444E-5 0.0 0.0 3.0744806766613304 0.0 22 3.4883765549002444E-5 0.0 0.0 3.237666931899564 0.0 23 6.976753109800489E-5 0.0 0.0 3.389620614631019 0.0 24 6.976753109800489E-5 0.0 0.0 3.5200510140187387 0.0 25 6.976753109800489E-5 0.0 0.0 3.653167463353732 0.0 26 6.976753109800489E-5 0.0 0.0 3.7964699722290343 0.0 27 6.976753109800489E-5 0.0 0.0 3.9479352822428027 0.0 28 6.976753109800489E-5 0.0 0.0 4.104040133074589 0.0 29 6.976753109800489E-5 0.0 0.0 4.265586851332019 0.0 30 1.0465129664700734E-4 0.0 0.0 4.4281103150248216 0.0 31 1.0465129664700734E-4 0.0 0.0 4.600261698009149 0.0 32 1.0465129664700734E-4 0.0 0.0 4.805692193327224 0.0 33 1.0465129664700734E-4 0.0 0.0 5.005262216033067 0.0 34 1.0465129664700734E-4 0.0 0.0 5.224332263680802 0.0 35 1.0465129664700734E-4 0.0 0.0 5.422297633171391 0.0 36 1.0465129664700734E-4 0.0 0.0 5.646739780713673 0.0 37 1.0465129664700734E-4 0.0 0.0 5.941821553492685 0.0 38 1.0465129664700734E-4 0.0 0.0 6.243914963147046 0.0 39 1.0465129664700734E-4 0.0 0.0 6.610857292957003 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGCTA 20 7.035053E-4 45.0 20 CGTTTTT 28940 0.0 43.91154 1 TATACGG 200 0.0 42.749996 1 TCGATTA 275 0.0 41.727272 40 TACGCGG 320 0.0 41.484375 1 CGTTTTA 1520 0.0 40.70724 1 CACTTAC 6945 0.0 40.561554 36 ACTTACT 6915 0.0 40.5423 37 CATGCGG 550 0.0 40.5 1 CGCACTT 6950 0.0 40.5 34 TAGTAGG 590 0.0 40.42373 1 ACCCGCA 6985 0.0 40.297066 31 CTTACTG 6935 0.0 40.263157 38 GCACTTA 6985 0.0 40.232643 35 CTAGCGG 840 0.0 40.178574 1 CCCGCAC 7130 0.0 39.730015 32 GGCGATA 500 0.0 39.600002 7 GGTACCT 2070 0.0 39.56522 7 CCGCACT 7115 0.0 39.560787 33 GGGTACC 2245 0.0 39.387527 6 >>END_MODULE