SRR1043437_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043437_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3360044
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127692	3.800307376927207	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	24804	0.7382046187490402	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13431	0.3997269083381051	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9193	0.273597607650376	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6932	0.20630682217256677	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5640	0.1678549447566758	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5303	0.15782531419231416	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3825	0.11383779498125621	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3721	0.11074259741836714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCGAT	20	7.035227E-4	45.0	18
CGTTTTT	36865	0.0	43.82816	1
TCACGAC	635	0.0	40.3937	24
CACGACG	630	0.0	40.357143	25
ACGGGTA	300	0.0	39.750004	4
CGTTTTA	2095	0.0	39.73747	1
TAGCATA	2080	0.0	39.699516	29
CGCACTT	7660	0.0	39.68342	34
CCGCACT	7685	0.0	39.554325	33
CTTACTG	7665	0.0	39.452057	38
AACACGT	405	0.0	39.444447	40
ACCCGCA	7700	0.0	39.41883	31
ACGTTAG	40	3.4608638E-7	39.375	20
TTCCGTA	355	0.0	39.295773	45
CACTTAC	7785	0.0	39.190754	36
GCACTTA	7750	0.0	39.135487	35
CCCGCAC	7785	0.0	39.075146	32
ACTTACT	7800	0.0	38.884613	37
AGGGTAC	990	0.0	38.863636	5
CCAGTAG	2195	0.0	38.54214	25