SRR1043436_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043436_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3973733
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	104293	2.624559828252175	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	40686	1.0238735214469619	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	15708	0.395295808752123	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12001	0.3020082124289679	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10999	0.2767926279898524	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6953	0.1749740105840025	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5531	0.13918901949376064	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5181	0.13038118061782208	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4370	0.10997215967957585	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACACG	55	1.8189894E-12	45.0	19
CGTTTTT	30930	0.0	43.67604	1
CGGTCTA	1015	0.0	41.89655	30
GCACTTA	11625	0.0	41.690323	35
CACTTAC	11630	0.0	41.65305	36
CGCACTT	11695	0.0	41.594696	34
ACTTACT	11640	0.0	41.50129	37
CCCGCAC	11825	0.0	41.498943	32
CTTACTG	11670	0.0	41.491	38
CCGCACT	11755	0.0	41.40153	33
ACCCGCA	11785	0.0	41.37251	31
TATACGG	230	0.0	41.086956	1
TCACGAC	1085	0.0	40.230415	24
TTATGAC	12410	0.0	40.177277	26
TATGACC	12350	0.0	40.172066	27
GTAGGGT	1490	0.0	40.167786	3
TCAACGC	12715	0.0	40.116005	15
AACGCAA	12665	0.0	40.11449	17
GCTTATG	12540	0.0	40.029903	24
CAACGCA	12715	0.0	40.027527	16