##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043436_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3973733 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.542442836496562 31.0 31.0 33.0 30.0 34.0 2 30.590750057942998 31.0 31.0 34.0 26.0 34.0 3 31.58466610615258 31.0 31.0 34.0 28.0 34.0 4 35.20029151430154 37.0 35.0 37.0 33.0 37.0 5 35.51753552641811 37.0 35.0 37.0 33.0 37.0 6 35.74975998639063 37.0 35.0 37.0 35.0 37.0 7 33.71473599257927 37.0 35.0 37.0 32.0 37.0 8 34.7339811205232 37.0 35.0 37.0 31.0 37.0 9 36.73006641362165 39.0 37.0 39.0 32.0 39.0 10 36.69806124367188 39.0 35.0 39.0 32.0 39.0 11 36.4794232526443 39.0 35.0 39.0 32.0 39.0 12 36.47563563027511 39.0 35.0 39.0 33.0 39.0 13 36.50027140726365 39.0 35.0 39.0 33.0 39.0 14 37.657973497464475 40.0 35.0 41.0 33.0 41.0 15 37.74024525553176 40.0 35.0 41.0 33.0 41.0 16 37.522244197081186 40.0 35.0 41.0 32.0 41.0 17 37.47332495665914 40.0 35.0 41.0 32.0 41.0 18 37.37232597157383 39.0 35.0 41.0 32.0 41.0 19 37.24974878785263 39.0 35.0 41.0 32.0 41.0 20 36.99005242677352 38.0 35.0 41.0 32.0 41.0 21 36.937568276479574 38.0 35.0 41.0 32.0 41.0 22 36.88100660009115 38.0 35.0 41.0 32.0 41.0 23 36.83718382689526 38.0 35.0 40.0 32.0 41.0 24 36.73658496934746 38.0 35.0 40.0 32.0 41.0 25 36.63061131686502 38.0 35.0 40.0 31.0 41.0 26 36.359821356895395 38.0 35.0 40.0 31.0 41.0 27 36.2545400005486 38.0 35.0 40.0 31.0 41.0 28 36.06080252498092 38.0 35.0 40.0 30.0 41.0 29 35.91677070402063 37.0 35.0 40.0 30.0 41.0 30 35.77852714311707 37.0 34.0 40.0 30.0 41.0 31 35.65752782081735 38.0 34.0 40.0 29.0 41.0 32 35.58689524434581 38.0 35.0 40.0 29.0 41.0 33 35.24942667260231 37.0 34.0 40.0 26.0 41.0 34 35.17450090381009 37.0 34.0 40.0 26.0 41.0 35 35.09539594129752 37.0 34.0 40.0 26.0 41.0 36 35.022154986256 37.0 34.0 40.0 26.0 41.0 37 34.911393644213135 37.0 34.0 40.0 25.0 41.0 38 34.80555538079685 37.0 34.0 40.0 25.0 41.0 39 34.6707174337078 36.0 34.0 40.0 24.0 41.0 40 34.58221727529253 36.0 34.0 40.0 24.0 41.0 41 34.473456319284665 36.0 34.0 40.0 24.0 41.0 42 34.34866434156497 36.0 33.0 40.0 23.0 41.0 43 34.18295944896147 35.0 33.0 40.0 23.0 41.0 44 33.95532588626362 35.0 33.0 40.0 23.0 41.0 45 33.73319646790562 35.0 33.0 40.0 22.0 41.0 46 33.72765080089679 35.0 33.0 40.0 23.0 41.0 47 33.69513376968206 35.0 33.0 39.0 23.0 41.0 48 33.604653860740015 35.0 33.0 39.0 23.0 41.0 49 33.55328100805968 35.0 33.0 39.0 23.0 41.0 50 33.49272787074521 35.0 33.0 39.0 23.0 41.0 51 33.06897896763572 35.0 33.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 7.0 11 14.0 12 23.0 13 62.0 14 106.0 15 180.0 16 450.0 17 988.0 18 2009.0 19 3630.0 20 6246.0 21 10133.0 22 15314.0 23 23431.0 24 35251.0 25 52241.0 26 69320.0 27 81948.0 28 88565.0 29 96095.0 30 108429.0 31 127454.0 32 154715.0 33 208344.0 34 390636.0 35 395955.0 36 385560.0 37 444535.0 38 556067.0 39 715603.0 40 417.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.01326460534716 17.463931270671683 24.668743471189433 27.854060652791716 2 30.187206840519988 21.13438421756067 27.40000397611012 21.278404965809226 3 27.179380194894826 21.67674577028703 31.442500037118748 19.701373997699392 4 24.186602371120554 24.80380538903847 28.162486004973157 22.847106234867816 5 22.32656295729985 34.258517117279894 26.30055919710761 17.114360728312647 6 84.62850926320414 2.01754873817642 12.09807000118025 1.2558719974391837 7 80.26782373148875 7.140665968246986 11.226697918556681 1.3648123817075781 8 79.9894960230091 3.290759595574237 13.819750848886928 2.8999935325297397 9 46.015824414977054 17.983618929605992 21.08830663761254 14.912250017804418 10 31.294754831288362 18.54012335504172 27.384854493243505 22.780267320426407 11 27.781458895200057 15.01268454624405 36.203841576673625 21.002014981882276 12 23.446165104701297 17.011057360924852 36.5259064964858 23.016871037888052 13 19.45092939057556 21.324407049995557 39.288447412043034 19.936216147385846 14 20.03428514195594 18.71965227658728 40.2594235697265 20.98663901173028 15 25.34052992488423 15.404683706731175 38.45157689255922 20.803209475825376 16 24.361047911372 16.08902762213767 34.82002942824794 24.72989503824238 17 24.065884648012332 20.220508021047213 34.828736606108166 20.88487072483229 18 25.766728665463933 23.85369122686401 30.1708745907186 20.208705516953454 19 27.804409606785356 21.631624469988296 29.032473998630508 21.531491924595837 20 27.074717903794742 23.18014320539402 32.38753081799909 17.357608072812138 21 23.861895099645597 18.86568624515034 32.98681617511796 24.285602480086105 22 24.96956891668363 20.591519359755676 32.223830841176294 22.2150808823844 23 26.351594332080186 19.5420276098067 33.12250722431527 20.98387083379784 24 28.605167986877827 17.36206232275797 30.25152922956827 23.78124046079593 25 21.429773968205716 19.488576610456718 31.870007370902876 27.21164205043469 26 19.52426094053123 20.386623862247415 33.877766825300036 26.211348371921318 27 21.087576845248535 22.936241564292317 32.84455699464458 23.131624595814564 28 24.836620880164823 23.180218701155813 30.589876068673966 21.3932843500054 29 23.28475516598624 20.06506224751386 35.751345145735755 20.898837440764137 30 28.486941623908802 20.99569850314553 30.28046927158921 20.236890601356457 31 29.769539121022977 20.98991049474134 28.884804288561917 20.355746095673766 32 30.114001116833972 19.725381649949806 27.551876283585237 22.60874094963099 33 23.622296716966137 22.525091645563506 32.16212563853686 21.690485998933497 34 22.84413673490393 24.2586253278718 30.907990043618934 21.98924789360533 35 26.516124762282722 27.2341146221953 26.605939553563363 19.643821061958615 36 25.488124139191033 25.575548231348204 26.74163060276068 22.194697026700084 37 25.262618298713075 29.722882740234436 24.888108989708165 20.126389971344324 38 25.131431829969454 24.329188699895035 25.26113354873113 25.27824592140438 39 23.50162932436578 21.415907913289594 31.337812580764734 23.74465018157989 40 21.345571028551742 22.90939023834767 31.21052672638046 24.53451200672013 41 21.75639379897945 26.580900125901763 25.87949416832988 25.783211906788907 42 20.44276754376804 21.120316840613096 28.59993361406013 29.836982001558738 43 21.5489314455702 20.076462107544717 31.972580945926666 26.40202550095842 44 25.262039497872657 22.75613384190634 29.283371580325102 22.698455079895908 45 25.43057120345026 23.90527999742308 28.804300641235837 21.85984815789083 46 22.504053493276977 25.26412821394895 27.9422145373129 24.289603755461176 47 21.209930309862287 26.601510468871464 30.336084482777277 21.852474738488972 48 24.626415514077067 24.66247732296055 29.60669476283384 21.104412400128545 49 22.307236042280646 22.45910834975576 31.76182194425242 23.471833663711177 50 21.094144976524593 23.186661006162215 33.41069971233598 22.30849430497721 51 20.55502974155536 20.592500804658993 32.526644341731064 26.325825112054584 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1231.0 1 13902.0 2 26573.0 3 96079.5 4 165586.0 5 101029.0 6 36472.0 7 32565.5 8 28659.0 9 28090.0 10 27521.0 11 27493.0 12 27465.0 13 26554.5 14 25644.0 15 23853.0 16 22062.0 17 20765.0 18 19468.0 19 18392.5 20 17317.0 21 16514.5 22 15712.0 23 15687.0 24 15662.0 25 17090.0 26 19907.0 27 21296.0 28 24147.5 29 26999.0 30 30651.0 31 34303.0 32 38902.0 33 43501.0 34 53244.5 35 62988.0 36 69102.5 37 75217.0 38 79604.5 39 83992.0 40 93985.0 41 103978.0 42 118928.0 43 133878.0 44 148809.5 45 163741.0 46 181866.0 47 199991.0 48 221818.0 49 243645.0 50 234684.0 51 225723.0 52 202814.5 53 179906.0 54 188514.5 55 197123.0 56 217804.0 57 238485.0 58 249877.0 59 261269.0 60 265705.0 61 270141.0 62 267229.0 63 264317.0 64 243135.5 65 221954.0 66 187581.0 67 153208.0 68 124487.0 69 95766.0 70 83736.5 71 71707.0 72 68294.5 73 64882.0 74 54467.0 75 33069.0 76 22086.0 77 16496.0 78 10906.0 79 8244.5 80 5583.0 81 4209.0 82 2835.0 83 2164.0 84 1493.0 85 1008.0 86 523.0 87 385.5 88 248.0 89 153.0 90 58.0 91 41.5 92 25.0 93 19.0 94 13.0 95 12.0 96 11.0 97 5.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3973733.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.421907130519468 #Duplication Level Percentage of deduplicated Percentage of total 1 76.97712175579052 17.259738751830252 2 9.23731812478153 4.142365782578314 3 2.9638651900836246 1.9936653011830336 4 1.3948235726415352 1.250984184369115 5 0.8564227247835583 0.9601315399781691 6 0.60368361889193 0.8121442823406457 7 0.4699779659563333 0.7376461614244343 8 0.3889629550496192 0.6977033004267984 9 0.3306133804821683 0.6671684261950448 >10 4.830741310776432 26.845391498543602 >50 1.5295577648805818 23.818904194989344 >100 0.40688122903144053 13.089760725235935 >500 0.005438172388929855 0.8516968126623817 >1k 0.003625448259286457 1.4167669746393563 >5k 3.6254482592864564E-4 0.4786594615576681 >10k+ 6.042413765477428E-4 4.977272602046044 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 104293 2.624559828252175 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 40686 1.0238735214469619 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 15708 0.395295808752123 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12001 0.3020082124289679 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10999 0.2767926279898524 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6953 0.1749740105840025 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 5531 0.13918901949376064 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5181 0.13038118061782208 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4370 0.10997215967957585 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02863805897376598 0.0 2 0.0 0.0 0.0 0.1000822148845934 0.0 3 0.0 0.0 0.0 0.16274369717341353 0.0 4 0.0 0.0 0.0 0.20454318395322485 0.0 5 0.0 0.0 0.0 0.46080096473517473 0.0 6 0.0 0.0 0.0 0.5592474381142367 0.0 7 0.0 0.0 0.0 0.8375499813399642 0.0 8 0.0 0.0 0.0 1.1498004521189522 0.0 9 0.0 0.0 0.0 1.4351492664454306 0.0 10 0.0 0.0 0.0 1.6194092557300654 0.0 11 0.0 0.0 0.0 1.783839024916873 0.0 12 0.0 0.0 0.0 1.9132639258853072 0.0 13 0.0 0.0 0.0 1.9830723402906034 0.0 14 0.0 0.0 0.0 2.0359948693080283 0.0 15 0.0 0.0 0.0 2.181374541268877 0.0 16 0.0 0.0 0.0 2.3447473697905723 0.0 17 0.0 0.0 0.0 2.572165769567306 0.0 18 0.0 0.0 0.0 2.696230471448384 0.0 19 0.0 0.0 0.0 2.8381373383667197 0.0 20 0.0 0.0 0.0 3.0103180057643533 0.0 21 0.0 0.0 0.0 3.2012971178486325 0.0 22 2.5165253931253056E-5 0.0 0.0 3.3760194758933224 0.0 23 2.5165253931253056E-5 0.0 0.0 3.5477723339741245 0.0 24 5.033050786250611E-5 0.0 0.0 3.679965412874997 0.0 25 5.033050786250611E-5 0.0 0.0 3.8173425340857072 0.0 26 5.033050786250611E-5 0.0 0.0 3.9521527993954297 0.0 27 5.033050786250611E-5 0.0 0.0 4.11041708136908 0.0 28 5.033050786250611E-5 0.0 0.0 4.267171448106856 0.0 29 5.033050786250611E-5 0.0 0.0 4.427851594457906 0.0 30 5.033050786250611E-5 0.0 0.0 4.592910494992995 0.0 31 5.033050786250611E-5 0.0 0.0 4.768865950480317 0.0 32 5.033050786250611E-5 0.0 0.0 4.9763283038895665 0.0 33 5.033050786250611E-5 0.0 0.0 5.172692780315135 0.0 34 5.033050786250611E-5 0.0 0.0 5.400287336869387 0.0 35 5.033050786250611E-5 0.0 0.0 5.5997974700363615 0.0 36 5.033050786250611E-5 0.0 0.0 5.827769505399583 0.0 37 5.033050786250611E-5 0.0 0.0 6.121397688269443 0.0 38 1.5099152358751834E-4 0.0 0.0 6.442632154701888 0.0 39 1.5099152358751834E-4 0.0 0.0 6.81198258665089 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACACG 55 1.8189894E-12 45.0 19 CGTTTTT 30930 0.0 43.67604 1 CGGTCTA 1015 0.0 41.89655 30 GCACTTA 11625 0.0 41.690323 35 CACTTAC 11630 0.0 41.65305 36 CGCACTT 11695 0.0 41.594696 34 ACTTACT 11640 0.0 41.50129 37 CCCGCAC 11825 0.0 41.498943 32 CTTACTG 11670 0.0 41.491 38 CCGCACT 11755 0.0 41.40153 33 ACCCGCA 11785 0.0 41.37251 31 TATACGG 230 0.0 41.086956 1 TCACGAC 1085 0.0 40.230415 24 TTATGAC 12410 0.0 40.177277 26 TATGACC 12350 0.0 40.172066 27 GTAGGGT 1490 0.0 40.167786 3 TCAACGC 12715 0.0 40.116005 15 AACGCAA 12665 0.0 40.11449 17 GCTTATG 12540 0.0 40.029903 24 CAACGCA 12715 0.0 40.027527 16 >>END_MODULE