SRR1043435_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043435_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1114788
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49139	4.407923300214929	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5363	0.4810780166273767	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2111	0.1893633587731479	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1395	0.12513590027879742	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1158	0.10387625270455009	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATCGA	65	0.0	45.000004	15
AACCGTA	20	7.0331956E-4	45.0	37
CTAGACG	20	7.0331956E-4	45.0	12
GGTACGC	20	7.0331956E-4	45.0	7
CTCGTAG	25	3.8907303E-5	45.0	21
TCGATCC	20	7.0331956E-4	45.0	45
GTTACGC	25	3.8907303E-5	45.0	9
CTAACGG	80	0.0	45.0	1
CCACTCG	20	7.0331956E-4	45.0	18
TACGCCC	20	7.0331956E-4	45.0	37
CTAGTTC	25	3.8907303E-5	45.0	32
GTAGACT	25	3.8907303E-5	45.0	8
CACTAGT	25	3.8907303E-5	45.0	29
GTATGCG	20	7.0331956E-4	45.0	11
CCGAGTG	25	3.8907303E-5	45.0	13
AGCGCGC	20	7.0331956E-4	45.0	35
ACGTGAC	20	7.0331956E-4	45.0	28
GTCGTGG	35	1.2118835E-7	45.0	1
TCCACCG	25	3.8907303E-5	45.0	30
CGTGTAT	25	3.8907303E-5	45.0	21