FastQCFastQC Report
Thu 26 May 2016
SRR1043434_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043434_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences458946
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT268825.857333978289385No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28850.6286142596296732No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11300.2462163304615358No Hit
GTCATGGGATTGAAGGGAATAATTTAGATTTTGATGAGATTCAGGAAATTA9170.19980564162232592No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA5430.11831457295629552No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC5000.10894527896528133No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4750.10349801501701725No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGGTAA207.0288515E-445.00000418
GTCGCTG207.0288515E-445.00000411
AGTCCAT207.0288515E-445.00000421
ACGCCTA207.0288515E-445.00000417
ACTGCAC207.0288515E-445.00000437
GCGACAC207.0288515E-445.00000415
TCCGCCT207.0288515E-445.00000429
CTGTACG207.0288515E-445.00000412
TTGTGCG207.0288515E-445.00000426
CCGATTC207.0288515E-445.00000411
TAGACGC207.0288515E-445.0000049
TGGACGT207.0288515E-445.00000410
GGCACGG207.0288515E-445.0000041
TGGACCA207.0288515E-445.00000423
CTTCATC253.8871294E-545.00000414
GCAACTA406.7993824E-945.0000048
GCAACCT207.0288515E-445.00000423
CATGAGA253.8871294E-545.0000043
CAGTTCA207.0288515E-445.00000442
CGGTTGA207.0288515E-445.00000441