SRR1043434_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043434_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	458946
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26882	5.857333978289385	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2885	0.6286142596296732	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1130	0.2462163304615358	No Hit
GTCATGGGATTGAAGGGAATAATTTAGATTTTGATGAGATTCAGGAAATTA	917	0.19980564162232592	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	543	0.11831457295629552	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	500	0.10894527896528133	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	475	0.10349801501701725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGGTAA	20	7.0288515E-4	45.000004	18
GTCGCTG	20	7.0288515E-4	45.000004	11
AGTCCAT	20	7.0288515E-4	45.000004	21
ACGCCTA	20	7.0288515E-4	45.000004	17
ACTGCAC	20	7.0288515E-4	45.000004	37
GCGACAC	20	7.0288515E-4	45.000004	15
TCCGCCT	20	7.0288515E-4	45.000004	29
CTGTACG	20	7.0288515E-4	45.000004	12
TTGTGCG	20	7.0288515E-4	45.000004	26
CCGATTC	20	7.0288515E-4	45.000004	11
TAGACGC	20	7.0288515E-4	45.000004	9
TGGACGT	20	7.0288515E-4	45.000004	10
GGCACGG	20	7.0288515E-4	45.000004	1
TGGACCA	20	7.0288515E-4	45.000004	23
CTTCATC	25	3.8871294E-5	45.000004	14
GCAACTA	40	6.7993824E-9	45.000004	8
GCAACCT	20	7.0288515E-4	45.000004	23
CATGAGA	25	3.8871294E-5	45.000004	3
CAGTTCA	20	7.0288515E-4	45.000004	42
CGGTTGA	20	7.0288515E-4	45.000004	41