SRR1043432_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043432_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3099779
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87984	2.838395898546316	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	30316	0.9780052061776018	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13899	0.4483868043496004	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10027	0.3234746735170475	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9614	0.3101511430331001	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6873	0.22172548430065497	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6009	0.19385252948677956	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5247	0.16927013183843106	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3638	0.11736320557046165	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	25	3.8923434E-5	45.0	1
CTTACCG	20	7.0351415E-4	45.0	38
CGTTTTT	23205	0.0	44.04977	1
TAGTAGG	735	0.0	42.551018	1
ACTACGG	175	0.0	42.42857	1
GACGGTC	1185	0.0	41.96203	28
TATACGG	280	0.0	41.785717	1
CGACGGT	1190	0.0	41.785713	27
CGGTCTA	1205	0.0	41.452282	30
TACGGGT	235	0.0	41.17021	3
TAGGGTA	1690	0.0	41.00592	4
CTAACCT	1250	0.0	40.859997	14
TCACGAC	1235	0.0	40.627533	24
GCGCGAC	4005	0.0	40.449436	8
CACTTAC	10465	0.0	40.42045	36
CATATGC	2495	0.0	40.31062	32
TAGCATA	2540	0.0	40.03937	29
CGCACTT	10510	0.0	40.0333	34
ACTTACT	10530	0.0	40.02137	37
GCACTTA	10540	0.0	39.87666	35