SRR1043431_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043431_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2711027
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97214	3.585873545339091	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	29977	1.1057433216268227	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11297	0.4167055510697607	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10060	0.371077086285013	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9407	0.34699027342774524	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5870	0.2165231109834022	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5204	0.19195677505240633	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4675	0.1724438745906994	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4165	0.15363181554444127	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2994	0.11043785251862116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	70	0.0	45.0	8
TATCGTC	20	7.034986E-4	45.0	37
CGTTTTT	27740	0.0	44.270008	1
CGACGGT	795	0.0	41.320755	27
CGCACTT	9950	0.0	40.99749	34
GCACTTA	9985	0.0	40.876316	35
CCGCACT	10010	0.0	40.864132	33
ACGGGTA	375	0.0	40.8	4
CTTACTG	9985	0.0	40.763645	38
CCCGCAC	10075	0.0	40.667496	32
ACCCGCA	10000	0.0	40.6575	31
CGTTTTA	1440	0.0	40.625	1
TAGCATA	3270	0.0	40.527523	29
CTAGCGG	650	0.0	40.499996	1
GCGCGAC	3770	0.0	40.404507	8
CGGGTAC	925	0.0	40.378384	5
TACGCGG	290	0.0	40.344826	1
CGGTCTA	835	0.0	40.1497	30
GTAGGGT	1090	0.0	40.04587	3
CATATGC	3335	0.0	39.872562	32