SRR1043430_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043430_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3186822
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	125886	3.9502049377091035	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	24758	0.7768868170233544	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13173	0.4133585120223219	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9571	0.30033054874103415	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7087	0.2223845574054654	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5703	0.17895571199144478	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5280	0.16568230042343124	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4512	0.1415830567254776	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4335	0.13602893415446485	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3557	0.11161589822086078	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	36615	43.943054	1
CACGACG	825	42.272728	25
TATACGG	150	42.000004	1
CGTTTTA	2020	41.992577	1
CGACGGT	820	41.98171	27
ACGGGTA	335	40.97015	4
CACTTAC	8000	40.809376	36
CGGTCTA	855	40.789474	30
CACGACC	780	40.67308	26
CATGCGG	510	40.588234	1
AGACACG	785	40.414013	23
CCTACGG	145	40.34483	1
GCACTTA	8120	40.20628	35
CTTACTG	8075	40.123844	38
CGCACTT	8170	40.09792	34
ACTTACT	8115	39.981518	37
ACACGAC	795	39.90566	25
GACGGTC	875	39.857143	28
CCGCACT	8210	39.79294	33
ACCCGCA	8190	39.725277	31