SRR1043429_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043429_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2801296
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87345	3.1180210873824117	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	23998	0.856674910470011	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9485	0.3385932796819758	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9336	0.33327431303225363	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7278	0.2598083172931386	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5023	0.1793098622923104	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4993	0.17823892940981603	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4627	0.16517354824338448	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3596	0.12836915484832737	No Hit
TTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCAT	3428	0.12237193070635877	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	24315	43.648983	1
TATACGG	155	43.548386	1
TTAATCG	230	42.06522	19
CATATGC	2730	41.373627	32
TCACGAC	605	41.280994	24
ACTTACT	7355	41.114887	37
CACTTAC	7430	41.002693	36
CGCACTT	7415	40.87323	34
CGGTCTA	605	40.537193	30
CTTACTG	7470	40.421684	38
ACGTAGG	190	40.263157	1
TAGCATA	2795	40.250446	29
ACCCGCA	7510	40.23635	31
GCACTTA	7560	40.17857	35
ACGACCA	595	40.084034	27
CCGCACT	7585	39.986813	33
CATGCGG	490	39.94898	1
GCCAGTA	2915	39.75129	24
CCAGTAG	2915	39.674103	25
GTTGATC	2955	39.67005	15