##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043429_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2801296 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51875453361587 31.0 31.0 33.0 30.0 34.0 2 30.58161686590778 31.0 31.0 34.0 26.0 34.0 3 31.55334530874281 31.0 31.0 34.0 28.0 34.0 4 35.175279584877856 37.0 35.0 37.0 32.0 37.0 5 35.49034625401957 37.0 35.0 37.0 33.0 37.0 6 35.73915751852 37.0 35.0 37.0 35.0 37.0 7 33.73898759716931 37.0 35.0 37.0 32.0 37.0 8 34.72647803016889 37.0 35.0 37.0 31.0 37.0 9 36.72292467486478 39.0 37.0 39.0 32.0 39.0 10 36.68615954900874 39.0 35.0 39.0 32.0 39.0 11 36.494705307828944 39.0 35.0 39.0 32.0 39.0 12 36.47381390613487 39.0 35.0 39.0 32.0 39.0 13 36.477626070218925 39.0 35.0 39.0 32.0 39.0 14 37.742748356475005 40.0 36.0 41.0 33.0 41.0 15 37.8318988782335 40.0 36.0 41.0 33.0 41.0 16 37.6449843215426 40.0 36.0 41.0 32.0 41.0 17 37.639986634757626 40.0 36.0 41.0 32.0 41.0 18 37.44621096806621 39.0 36.0 41.0 32.0 41.0 19 37.26228716993849 39.0 35.0 41.0 32.0 41.0 20 37.033055414351075 39.0 35.0 41.0 32.0 41.0 21 36.94017197754182 38.0 35.0 41.0 32.0 41.0 22 36.84740884219304 38.0 35.0 40.0 32.0 41.0 23 36.789093333942574 38.0 35.0 40.0 32.0 41.0 24 36.66795940164838 38.0 35.0 40.0 32.0 41.0 25 36.553111845374424 38.0 35.0 40.0 31.0 41.0 26 36.28418417760922 38.0 35.0 40.0 31.0 41.0 27 36.156819557804674 38.0 35.0 40.0 31.0 41.0 28 35.98889870974006 37.0 35.0 40.0 30.0 41.0 29 35.88958610585957 37.0 35.0 40.0 30.0 41.0 30 35.72972831146726 37.0 35.0 40.0 30.0 41.0 31 35.54046805478607 37.0 34.0 40.0 29.0 41.0 32 35.45520823218967 37.0 34.0 40.0 28.0 41.0 33 35.21724980152044 37.0 34.0 40.0 26.0 41.0 34 35.10228265774128 37.0 34.0 40.0 26.0 41.0 35 34.95981931220407 37.0 34.0 40.0 25.0 41.0 36 34.82665309199742 37.0 34.0 40.0 25.0 41.0 37 34.70023339197286 37.0 34.0 40.0 24.0 41.0 38 34.56669805689938 36.0 34.0 40.0 23.0 41.0 39 34.43020766102547 36.0 34.0 40.0 23.0 41.0 40 34.32544900645987 36.0 34.0 40.0 23.0 41.0 41 34.22712344571941 36.0 33.0 40.0 23.0 41.0 42 34.10489787584032 35.0 33.0 40.0 23.0 41.0 43 33.93714088050674 35.0 33.0 40.0 23.0 41.0 44 33.713732857934325 35.0 33.0 40.0 22.0 41.0 45 33.50935174290757 35.0 33.0 40.0 21.0 41.0 46 33.48259948252523 35.0 33.0 39.0 22.0 41.0 47 33.43987318726761 35.0 33.0 39.0 22.0 41.0 48 33.337354567314556 35.0 33.0 39.0 22.0 41.0 49 33.29317929986692 35.0 33.0 39.0 22.0 41.0 50 33.21072817724367 35.0 33.0 39.0 21.0 41.0 51 32.78371046829753 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 6.0 10 2.0 11 9.0 12 18.0 13 31.0 14 78.0 15 145.0 16 292.0 17 765.0 18 1471.0 19 2785.0 20 4929.0 21 7534.0 22 11754.0 23 17746.0 24 26733.0 25 38558.0 26 50749.0 27 59410.0 28 65248.0 29 69952.0 30 77936.0 31 90854.0 32 111357.0 33 147059.0 34 262091.0 35 284558.0 36 283721.0 37 316236.0 38 389279.0 39 479714.0 40 274.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.06126450043123 17.30763189609381 23.650231892666824 28.98087171080814 2 30.691544199541926 21.399059578138118 27.073683038136632 20.835713184183323 3 27.001537859619262 21.95019733723248 31.852435444165845 19.195829358982415 4 24.232569496404523 24.687823064752887 29.04380686653606 22.03580057230653 5 22.393492155059658 34.14615949189233 26.73708883316865 16.72325951987937 6 82.95453247354082 2.3260305230150617 13.230090643759173 1.4893463596849459 7 78.55139192716514 7.449266339579966 12.433030997081351 1.5663107361735424 8 77.92161199673295 3.7589387197925532 15.207318326945812 3.1121309565286923 9 45.47223856386473 18.435074337021153 21.90818107047595 14.184506028638172 10 29.757369446142075 19.399663584283847 28.489313517743213 22.353653451830866 11 26.30525299718416 15.552908368126753 37.9004575025274 20.241381132161685 12 21.924673436866364 18.41026439191003 38.1201772322525 21.544884938971105 13 18.394164700909865 22.054184920122687 39.97410484290128 19.57754553606616 14 18.738862298022056 19.022016952153574 40.79133372553275 21.447787024291614 15 23.264838846019842 15.376454326854427 39.79604440230522 21.562662424820513 16 23.579300438082946 16.303989296382817 35.04195915033613 25.074751115198108 17 24.11626618536563 19.67321554023566 34.23472564127461 21.975792633124097 18 24.714703480103495 22.77096029837618 31.48110731604229 21.033228905478037 19 25.936209525876595 20.83635574391282 30.86449986006477 22.362934870145818 20 25.707672448752295 22.50922430189455 33.397934384656246 18.38516886469691 21 23.38906706038919 18.487050279584878 34.05894985749453 24.0649328025314 22 23.65248085172006 20.943698916501504 33.030854290299914 22.372965941478515 23 24.563809036960034 20.047792164769447 34.78771968403196 20.600679114238552 24 26.57013039678777 17.91245909036389 32.7488419645764 22.768568548271944 25 21.42536882928473 20.540314197428618 32.870178660163006 25.16413831312364 26 20.311634329253316 20.15852662481937 34.692228168676216 24.8376108772511 27 21.434721643125183 22.01716634015113 34.56871390956186 21.979398107161828 28 22.978150113376095 22.40031042774487 32.299442829319005 22.322096629560033 29 22.65062314014656 20.752751583552755 35.98284508313295 20.613780193167734 30 27.888305984087363 21.264550408096824 30.746375963125637 20.10076764469017 31 27.762221486055026 20.937487505783036 30.394645906751734 20.905645101410204 32 28.48702886092723 19.68935092899858 28.821659688943974 23.00196052113022 33 23.199868917815184 22.361649750686823 32.10949503372725 22.328986297770744 34 23.3777508695975 23.014704622431903 31.426561134560576 22.180983373410022 35 27.068578258063408 24.579730239146453 28.09927976193876 20.25241174085138 36 24.83786076159035 24.264626087353854 28.41581182424135 22.481701326814445 37 24.943740325906294 27.833331429452652 26.609397935812567 20.613530308828484 38 24.659836018757034 23.52668193578972 27.32092574294184 24.49255630251141 39 24.058864182863932 21.789021938417076 31.461295057716143 22.69081882100285 40 22.07071298427585 22.043689777874242 31.570458816205072 24.31513842164484 41 21.582546078672156 25.49266482371017 27.97926388357389 24.945525214043784 42 21.566374992146493 20.926635385907094 29.79595872767462 27.711030894271794 43 22.735726606542116 20.385957071298428 32.35052632781398 24.527789994345476 44 24.489343503863925 23.073677326494593 30.12676989507714 22.310209274564343 45 25.58894168984641 22.917713801040662 30.02638778622466 21.466956722888263 46 23.02491418257835 23.418482016895037 29.53022458176501 24.0263792187616 47 21.868056785145164 25.710778154111523 31.079221903004893 21.34194315773842 48 24.08945716554052 24.56687904455652 30.09935401328528 21.24430977661768 49 22.207506811133133 21.924387854764365 31.710893814862835 24.157211519239667 50 21.060930369371892 24.067717228025884 33.029319286501675 21.84203311610055 51 21.17002273233532 20.83007293766885 32.3769069744861 25.622997355509735 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1266.0 1 11380.0 2 21494.0 3 76133.0 4 130772.0 5 79213.5 6 27655.0 7 24947.0 8 22239.0 9 22432.0 10 22625.0 11 22568.0 12 22511.0 13 21606.0 14 20701.0 15 19321.5 16 17942.0 17 16723.0 18 15504.0 19 14883.5 20 14263.0 21 13384.0 22 12505.0 23 12531.0 24 12557.0 25 13247.0 26 15895.5 27 17854.0 28 19836.0 29 21818.0 30 24738.5 31 27659.0 32 32314.0 33 36969.0 34 41932.5 35 46896.0 36 49609.5 37 52323.0 38 55488.0 39 58653.0 40 66106.5 41 73560.0 42 84792.5 43 96025.0 44 102477.5 45 108930.0 46 116659.0 47 124388.0 48 141596.5 49 158805.0 50 159830.5 51 160856.0 52 150498.0 53 140140.0 54 143653.0 55 147166.0 56 157327.0 57 167488.0 58 170338.5 59 173189.0 60 173129.5 61 173070.0 62 169621.5 63 166173.0 64 152575.0 65 138977.0 66 121286.0 67 103595.0 68 89080.5 69 74566.0 70 64704.5 71 54843.0 72 51613.0 73 48383.0 74 40964.5 75 26134.0 76 18722.0 77 14494.0 78 10266.0 79 7937.5 80 5609.0 81 4060.0 82 2511.0 83 1867.5 84 1224.0 85 964.0 86 704.0 87 487.5 88 271.0 89 173.0 90 75.0 91 58.0 92 41.0 93 27.0 94 13.0 95 14.0 96 15.0 97 8.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2801296.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.544220368959493 #Duplication Level Percentage of deduplicated Percentage of total 1 77.86276657694788 19.110809014014624 2 8.893912328252728 4.365882882536811 3 2.872664960971439 2.1152196554481426 4 1.4600600994587005 1.4334414733215703 5 0.8686347080538205 1.0659980847299884 6 0.6385672823044984 0.9403881658373507 7 0.472818135629031 0.8123466760723661 8 0.402916785092552 0.7911422690931433 9 0.31977507232395275 0.706376685925715 >10 4.51512586898611 27.477304235771477 >50 1.3981353338333982 23.56263405321062 >100 0.2859578600668875 10.107332157845178 >500 0.005570349479418714 0.9270367768424609 >1k 0.0021662470197739443 1.1735883030719265 >5k 6.189277199354127E-4 1.1819434071647303 >10k+ 3.0946385996770637E-4 4.228556159113893 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 87345 3.1180210873824117 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 23998 0.856674910470011 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9485 0.3385932796819758 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9336 0.33327431303225363 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 7278 0.2598083172931386 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 5023 0.1793098622923104 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4993 0.17823892940981603 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4627 0.16517354824338448 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3596 0.12836915484832737 No Hit TTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCAT 3428 0.12237193070635877 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03041449386284063 0.0 2 0.0 0.0 0.0 0.10384479183920585 0.0 3 0.0 0.0 0.0 0.1597474883054129 0.0 4 0.0 0.0 0.0 0.19765851234571427 0.0 5 0.0 0.0 0.0 0.429765365744998 0.0 6 0.0 0.0 0.0 0.508586025896585 0.0 7 0.0 0.0 0.0 0.7319112296594148 0.0 8 0.0 0.0 0.0 0.9705864714046641 0.0 9 0.0 0.0 0.0 1.1944114438459912 0.0 10 0.0 0.0 0.0 1.344484838446205 0.0 11 0.0 0.0 0.0 1.505910121600859 0.0 12 0.0 0.0 0.0 1.6404192916421543 0.0 13 0.0 0.0 0.0 1.7113507462260324 0.0 14 0.0 0.0 0.0 1.7626127335347639 0.0 15 0.0 0.0 0.0 1.9088664675207476 0.0 16 0.0 0.0 0.0 2.0791804936001053 0.0 17 0.0 0.0 0.0 2.3010063913274426 3.569776274981294E-5 18 0.0 0.0 0.0 2.4289471730227725 3.569776274981294E-5 19 0.0 0.0 0.0 2.575129511483256 3.569776274981294E-5 20 0.0 0.0 0.0 2.7409456194561375 3.569776274981294E-5 21 0.0 0.0 0.0 2.913115929198485 3.569776274981294E-5 22 3.569776274981294E-5 0.0 0.0 3.0860001941958295 3.569776274981294E-5 23 3.569776274981294E-5 0.0 0.0 3.244498260804999 3.569776274981294E-5 24 1.0709328824943883E-4 0.0 0.0 3.378007893489299 3.569776274981294E-5 25 1.0709328824943883E-4 0.0 0.0 3.5187998697745613 3.569776274981294E-5 26 1.0709328824943883E-4 0.0 0.0 3.668480588984527 3.569776274981294E-5 27 1.0709328824943883E-4 0.0 0.0 3.8281566817644403 3.569776274981294E-5 28 1.0709328824943883E-4 0.0 0.0 3.9945082561785688 3.569776274981294E-5 29 1.0709328824943883E-4 0.0 0.0 4.166357286056169 3.569776274981294E-5 30 1.0709328824943883E-4 0.0 0.0 4.346202614789726 3.569776274981294E-5 31 1.0709328824943883E-4 0.0 0.0 4.524370148674042 3.569776274981294E-5 32 1.0709328824943883E-4 0.0 0.0 4.722528429698254 3.569776274981294E-5 33 1.0709328824943883E-4 0.0 0.0 4.928468823001925 3.569776274981294E-5 34 1.0709328824943883E-4 0.0 0.0 5.160789862977707 3.569776274981294E-5 35 1.0709328824943883E-4 0.0 0.0 5.36062593885116 3.569776274981294E-5 36 1.0709328824943883E-4 0.0 0.0 5.576918683352277 3.569776274981294E-5 37 1.0709328824943883E-4 0.0 0.0 5.848114586962605 3.569776274981294E-5 38 1.0709328824943883E-4 0.0 0.0 6.146690674602041 3.569776274981294E-5 39 1.0709328824943883E-4 0.0 0.0 6.486533375980261 3.569776274981294E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 24315 0.0 43.648983 1 TATACGG 155 0.0 43.548386 1 TTAATCG 230 0.0 42.06522 19 CATATGC 2730 0.0 41.373627 32 TCACGAC 605 0.0 41.280994 24 ACTTACT 7355 0.0 41.114887 37 CACTTAC 7430 0.0 41.002693 36 CGCACTT 7415 0.0 40.87323 34 CGGTCTA 605 0.0 40.537193 30 CTTACTG 7470 0.0 40.421684 38 ACGTAGG 190 0.0 40.263157 1 TAGCATA 2795 0.0 40.250446 29 ACCCGCA 7510 0.0 40.23635 31 GCACTTA 7560 0.0 40.17857 35 ACGACCA 595 0.0 40.084034 27 CCGCACT 7585 0.0 39.986813 33 CATGCGG 490 0.0 39.94898 1 GCCAGTA 2915 0.0 39.75129 24 CCAGTAG 2915 0.0 39.674103 25 GTTGATC 2955 0.0 39.67005 15 >>END_MODULE