SRR1043428_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043428_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3905509
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	108099	2.767859451866581	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	41251	1.0562259618400571	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14854	0.38033454794240645	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11788	0.3018300559542943	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10930	0.2798610885290496	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7078	0.18123117882969927	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5681	0.14546119340654445	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5440	0.1392904228360503	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	5013	0.1283571488377059	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4661	0.11934423912478502	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	33740	43.83299	1
TTAATCG	525	41.57143	19
CGCACTT	12500	41.256	34
CTTACTG	12470	41.138733	38
GCACTTA	12520	41.082268	35
ACCCGCA	12620	40.721077	31
CCGCACT	12650	40.677864	33
TAATCGT	540	40.416664	20
ACTTACT	12755	40.395924	37
CACTTAC	12785	40.336334	36
CGGTCTA	865	40.317917	30
CCCGCAC	12835	40.23179	32
TCACGAC	885	39.915253	24
ATAACGG	175	39.857143	1
CACGACG	865	39.797688	25
TCAACGC	13540	39.715656	15
GCTTATG	13310	39.658154	24
TAGTAGG	835	39.61078	1
AACGCAA	13540	39.599335	17
CAACGCA	13570	39.594696	16