SRR1043427_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043427_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3112489
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88644	2.8480100652564557	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	27462	0.882316371238581	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10679	0.3431016141743794	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9734	0.3127400610893725	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8901	0.28597691429592204	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5361	0.17224157258065811	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5155	0.16562307529440265	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4847	0.1557274579926226	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3593	0.11543815897823254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACACCG	20	7.0351467E-4	45.0	19
CGTTTTT	25860	0.0	43.7732	1
TATACGG	170	0.0	42.352943	1
TACGGGA	625	0.0	41.4	3
CACTTAC	8685	0.0	41.243526	36
CGCACTT	8705	0.0	41.174614	34
ACTTACT	8665	0.0	40.975185	37
CCGCACT	8720	0.0	40.974773	33
CTTGCGG	910	0.0	40.796703	1
ACCCGCA	8820	0.0	40.688774	31
CTTACTG	8700	0.0	40.65517	38
CCCGCAC	8840	0.0	40.62217	32
GCACTTA	8875	0.0	40.385918	35
GCGCGAC	3265	0.0	39.96937	8
CATATGC	2875	0.0	39.83478	32
CGAATAT	260	0.0	39.80769	14
GCGATAT	85	0.0	39.705883	8
GGTACCT	2885	0.0	39.69671	7
ATCAACG	9470	0.0	39.654175	14
ACATACG	585	0.0	39.615383	16