SRR1043426_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043426_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2889723
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	105089	3.636646142208094	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	26026	0.9006399575322618	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11260	0.38965672488331926	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11165	0.38636921255082235	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8734	0.30224350223187485	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4854	0.16797457749410585	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4377	0.15146780504567392	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4072	0.1409131601887101	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3689	0.1276592946798015	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	29085	43.72357	1
CGCACTT	8165	41.748314	34
CACTTAC	8215	41.65855	36
ACCCGCA	8320	41.29507	31
ACTTACT	8205	41.270565	37
CTTACTG	8180	41.204155	38
CCCGCAC	8355	41.17594	32
CCGCACT	8315	41.02225	33
GCACTTA	8345	40.9287	35
CACGACG	660	40.90909	25
ATAGCGG	335	40.298508	1
TATGACC	8660	40.141453	27
TACGGGA	545	40.04587	3
TTATGAC	8740	40.005722	26
GCTTATG	8785	39.903244	24
ATCAACG	8880	39.83108	14
CTTATGA	8780	39.823463	25
AACGCAA	8875	39.777466	17
AGCTTAT	8825	39.77337	23
CGGTCTA	680	39.705883	30