FastQCFastQC Report
Thu 26 May 2016
SRR1043426_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043426_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2889723
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1050893.636646142208094No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC260260.9006399575322618No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC112600.38965672488331926No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111650.38636921255082235No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC87340.30224350223187485No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC48540.16797457749410585No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43770.15146780504567392No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC40720.1409131601887101No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA36890.1276592946798015No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT290850.043.723571
CGCACTT81650.041.74831434
CACTTAC82150.041.6585536
ACCCGCA83200.041.2950731
ACTTACT82050.041.27056537
CTTACTG81800.041.20415538
CCCGCAC83550.041.1759432
CCGCACT83150.041.0222533
GCACTTA83450.040.928735
CACGACG6600.040.9090925
ATAGCGG3350.040.2985081
TATGACC86600.040.14145327
TACGGGA5450.040.045873
TTATGAC87400.040.00572226
GCTTATG87850.039.90324424
ATCAACG88800.039.8310814
CTTATGA87800.039.82346325
AACGCAA88750.039.77746617
AGCTTAT88250.039.7733723
CGGTCTA6800.039.70588330