SRR1043425_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043425_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	906367
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69417	7.658818116723137	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7009	0.7733070599437094	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2847	0.3141111713025739	No Hit
GTAATGGGTTTACCTGGCTTCCTTCTTGGTACATAGGCTACTCTTCCACAC	1765	0.19473347992590198	No Hit
TTAGGCGGGATAAAATTTCAATTAATTCCATAATTTACACCAACTTCCTAA	1274	0.14056116341393718	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1219	0.1344929813199289	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1040	0.11474380686852013	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	1034	0.1140818233673556	Illumina Single End Adapter 1 (95% over 21bp)
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	949	0.10470372376752463	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	929	0.10249711209697618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	145	0.0	45.000004	1
CGGTTAC	35	1.2115561E-7	45.000004	19
TAAACGG	90	0.0	45.000004	1
CATCGAA	35	1.2115561E-7	45.000004	13
ACGTAGG	55	1.8189894E-12	45.000004	1
TATCGTC	35	1.2115561E-7	45.000004	11
TACCGTA	35	1.2115561E-7	45.000004	23
CAGCGCG	20	7.0324965E-4	45.0	27
TCGTTAC	20	7.0324965E-4	45.0	33
CACGCGT	20	7.0324965E-4	45.0	14
TCGGGCA	50	2.1827873E-11	45.0	4
GCACGAT	20	7.0324965E-4	45.0	40
CACGACC	20	7.0324965E-4	45.0	26
CGACAAG	20	7.0324965E-4	45.0	27
AACGGCC	25	3.8901508E-5	45.0	5
AGGCCGC	20	7.0324965E-4	45.0	35
GTTCGCG	20	7.0324965E-4	45.0	33
CTTGCGG	190	0.0	45.0	1
GCGATAA	50	2.1827873E-11	45.0	8
CCGGTTA	20	7.0324965E-4	45.0	29